Difference between revisions of "RXN-5901"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-252 RXN1G-252] == * direction: ** LEFT-TO-RIGHT * common name: ** cis,cis-delta9,21-3-oxo-C40...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5901 RXN-5901] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-252 RXN1G-252] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5901 RXN-5901] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** cis,cis-delta9,21-3-oxo-C40:2-[acyl-carrier protein] reductase
+
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.M9 EC-1.1.1.M9]
+
** [http://enzyme.expasy.org/EC/1.1.1.36 EC-1.1.1.36]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[cis-cis-D9-21-3-oxo-C40-2-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[cis-cis-D9-21-3-hydroxyC40-2-ACPs]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACETOACETYL-COA]][c] '''=>''' 1 [[CPD-650]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 a cis,cis-delta9,21-3-oxo-C40:2-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a cis,cis-delta9,21-3-hydroxyC40:2-[acp][c] '''+''' 1 NADP+[c]
+
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 acetoacetyl-CoA[c] '''=>''' 1 (3R)-3-hydroxybutanoyl-CoA[c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13083]]
+
* Gene: [[Tiso_gene_500]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6563]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5424]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6562]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5425]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
+
* [[PWY-5741]], ethylmalonyl-CoA pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5741 PWY-5741]
−
** '''86''' reactions found over '''182''' reactions in the full pathway
+
** '''2''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY1-3]], polyhydroxybutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5676]], acetyl-CoA fermentation to butanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5676 PWY-5676]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[annotation]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01977 R01977]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=cis,cis-delta9,21-3-oxo-C40:2-[acyl-carrier protein] reductase}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: ec number=EC-1.1.1.M9}}
+
{{#set: ec number=EC-1.1.1.36}}
−
{{#set: gene associated=Tiso_gene_13083}}
+
{{#set: gene associated=Tiso_gene_500|Tiso_gene_6563|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_5424|Tiso_gene_13394|Tiso_gene_6562|Tiso_gene_136|Tiso_gene_5425}}
−
{{#set: in pathway=PWYG-321}}
+
{{#set: in pathway=PWY-5741|PWY1-3|PWY-7216|PWY-5676}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:44, 21 March 2018

Reaction RXN-5901

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • polyketide_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADPH[c] + 1 H+[c] + 1 acetoacetyl-CoA[c] => 1 (3R)-3-hydroxybutanoyl-CoA[c] + 1 NADP+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5741, ethylmalonyl-CoA pathway: PWY-5741
    • 2 reactions found over 11 reactions in the full pathway
  • PWY1-3, polyhydroxybutanoate biosynthesis: PWY1-3
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7216, (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): PWY-7216
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5676, acetyl-CoA fermentation to butanoate II: PWY-5676
    • 2 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-5901&oldid=43509"