Difference between revisions of "TRANSALDOL-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** oxidoreductase ** ORF...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** transaldolase...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** oxidoreductase
 
 
** ORF
 
** ORF
 +
** transaldolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
+
** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD0-2352]][c] '''=>''' 1 [[CPD0-2353]][c] '''+''' 1 [[tRNA-fragment]][c]
+
** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a tRNA precursor with a 5' extension and a short 3' extension[c] '''=>''' 1 a tRNA precursor with a short 3' extension[c] '''+''' 1 a tRNA fragment[c]
+
** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14345]]
+
* Gene: [[Tiso_gene_17601]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10972]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_1831]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_3898]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_10971]]
+
** Source: [[orthology-athaliana]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_14344]]
+
** Source: [[orthology-creinhardtii]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
+
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q02773 Q02773]
+
** [http://www.uniprot.org/uniprot/P17441 P17441]
−
** [http://www.uniprot.org/uniprot/P41812 P41812]
+
** [http://www.uniprot.org/uniprot/P17440 P17440]
−
** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
+
** [http://www.uniprot.org/uniprot/P37837 P37837]
−
** [http://www.uniprot.org/uniprot/P48206 P48206]
+
** [http://www.uniprot.org/uniprot/P45055 P45055]
−
** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
+
** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
−
** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
+
** [http://www.uniprot.org/uniprot/P0A867 P0A867]
−
** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
+
** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
−
** [http://www.uniprot.org/uniprot/P29433 P29433]
+
** [http://www.uniprot.org/uniprot/Q58370 Q58370]
−
** [http://www.uniprot.org/uniprot/P25817 P25817]
+
** [http://www.uniprot.org/uniprot/P34214 P34214]
−
** [http://www.uniprot.org/uniprot/P22835 P22835]
+
** [http://www.uniprot.org/uniprot/P0A870 P0A870]
−
** [http://www.uniprot.org/uniprot/P25814 P25814]
+
** [http://www.uniprot.org/uniprot/P15019 P15019]
−
** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
+
** [http://www.uniprot.org/uniprot/P53228 P53228]
−
** [http://www.uniprot.org/uniprot/Q55005 Q55005]
+
** [http://www.uniprot.org/uniprot/P51778 P51778]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P72797 P72797]
−
{{#set: common name=oxidoreductase}}
+
** [http://www.uniprot.org/uniprot/O04894 O04894]
 +
** [http://www.uniprot.org/uniprot/P78865 P78865]
 +
{{#set: direction=REVERSIBLE}}
 
{{#set: common name=ORF}}
 
{{#set: common name=ORF}}
−
{{#set: ec number=EC-3.1.26.5}}
+
{{#set: common name=transaldolase}}
−
{{#set: gene associated=Tiso_gene_14345|Tiso_gene_10972|Tiso_gene_3898|Tiso_gene_10971|Tiso_gene_14344}}
+
{{#set: ec number=EC-2.2.1.2}}
−
{{#set: in pathway=PWY0-1479}}
+
{{#set: gene associated=Tiso_gene_17601|Tiso_gene_1831}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: in pathway=PWY-5723|P185-PWY|P124-PWY|PWY-1861|NONOXIPENT-PWY}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:48, 21 March 2018

Reaction TRANSALDOL-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • transaldolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-glyceraldehyde 3-phosphate[c] + 1 D-sedoheptulose 7-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-erythrose 4-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TRANSALDOL-RXN&oldid=43862"