Difference between revisions of "RXN0-6480"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5515 PWY-5515] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6480 RXN0-6480] == * direction: ** LEFT-TO-RIGHT * common name: ** oxidoreductase ** ORF * ec...")
 
(One intermediate revision by the same user not shown)
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5515 PWY-5515] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6480 RXN0-6480] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** L-arabinose degradation II
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** oxidoreductase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[RXN-8772]]
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** 1 [[WATER]][c] '''+''' 1 [[CPD0-2354]][c] '''=>''' 1 [[tRNA-fragment]][c] '''+''' 1 [[tRNAs]][c]
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** 4 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_7799]]
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** 1 H2O[c] '''+''' 1 a tRNA precursor with a 5' extension[c] '''=>''' 1 a tRNA fragment[c] '''+''' 1 an uncharged tRNA[c]
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*** [[Tiso_gene_8988]]
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*** [[Tiso_gene_7800]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_18748]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_14344]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=L-ARABINITOL-4-DEHYDROGENASE-RXN L-ARABINITOL-4-DEHYDROGENASE-RXN]
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* Gene: [[Tiso_gene_10971]]
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* [http://metacyc.org/META/NEW-IMAGE?object=L-XYLULOSE-REDUCTASE-RXN L-XYLULOSE-REDUCTASE-RXN]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10972]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3898]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14345]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=L-arabinose degradation II}}
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{{#set: common name=oxidoreductase}}
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{{#set: reaction found=1}}
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{{#set: common name=ORF}}
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{{#set: total reaction=3}}
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{{#set: ec number=EC-3.1.26.5}}
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{{#set: completion rate=33.0}}
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{{#set: gene associated=Tiso_gene_14344|Tiso_gene_10971|Tiso_gene_10972|Tiso_gene_3898|Tiso_gene_14345}}
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{{#set: in pathway=PWY0-1479}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:48, 21 March 2018

Reaction RXN0-6480

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • oxidoreductase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 a tRNA precursor with a 5' extension[c] => 1 a tRNA fragment[c] + 1 an uncharged tRNA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-6480&oldid=43898"