Difference between revisions of "RXN-9929"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-5293 RXN3O-5293] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9929 RXN-9929] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-5293 RXN3O-5293] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9929 RXN-9929] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** polyketide_synthase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.3.98.1 EC-1.3.98.1]
−
** [http://enzyme.expasy.org/EC/1.3.1.10 EC-1.3.1.10]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c] '''=>''' 1 [[Stearoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[DI-H-OROTATE]][c] '''+''' 1 [[FUM]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[OROTATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 a trans-octadec-2-enoyl-[acp][c] '''=>''' 1 a stearoyl-[acp][c] '''+''' 1 NADP+[c]
+
** 1 (S)-dihydroorotate[c] '''+''' 1 fumarate[c] '''=>''' 1 succinate[c] '''+''' 1 orotate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10876]]
+
* Gene: [[Tiso_gene_5280]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-synechocystis]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
+
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-synechocystis]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30062 30062]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01867 R01867]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P74782 P74782]
 +
** [http://www.uniprot.org/uniprot/Q63707 Q63707]
 +
** [http://www.uniprot.org/uniprot/Q48240 Q48240]
 +
** [http://www.uniprot.org/uniprot/P32746 P32746]
 +
** [http://www.uniprot.org/uniprot/Q02127 Q02127]
 +
** [http://www.uniprot.org/uniprot/P32748 P32748]
 +
** [http://www.uniprot.org/uniprot/P28294 P28294]
 +
** [http://www.uniprot.org/uniprot/P28272 P28272]
 +
** [http://www.uniprot.org/uniprot/P46539 P46539]
 +
** [http://www.uniprot.org/uniprot/Q9CFC9 Q9CFC9]
 +
** [http://www.uniprot.org/uniprot/P25996 P25996]
 +
** [http://www.uniprot.org/uniprot/Q58070 Q58070]
 +
** [http://www.uniprot.org/uniprot/P0A7E1 P0A7E1]
 +
** [http://www.uniprot.org/uniprot/Q9JX66 Q9JX66]
 +
** [http://www.uniprot.org/uniprot/Q9PPB6 Q9PPB6]
 +
** [http://www.uniprot.org/uniprot/Q9CFW8 Q9CFW8]
 +
** [http://www.uniprot.org/uniprot/P45477 P45477]
 +
** [http://www.uniprot.org/uniprot/P32747 P32747]
 +
** [http://www.uniprot.org/uniprot/P07670 P07670]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: ec number=EC-1.3.98.1}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: gene associated=Tiso_gene_5280}}
−
{{#set: ec number=EC-1.3.1.10}}
+
{{#set: in pathway=PWY-7790}}
−
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_136|Tiso_gene_500|Tiso_gene_135|Tiso_gene_13394}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: in pathway=PWY3O-355}}
+
{{#set: reconstruction source=orthology-synechocystis}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Latest revision as of 19:49, 21 March 2018

Reaction RXN-9929

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (S)-dihydroorotate[c] + 1 fumarate[c] => 1 succinate[c] + 1 orotate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9929&oldid=43938"