Difference between revisions of "RXN0-1461"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7688 PWY-7688] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7688 PWY-7688] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis
+
** coproporphyrinogen-iii_oxidase
 +
** coproporphyrinogen_iii_oxidase_chloroplast
 +
** coproporphyrinogen_oxidase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
* '''2''' reaction(s) found
+
* With identifiers:
−
** [[DTDPGLUCDEHYDRAT-RXN]]
+
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
−
** [[DTDPGLUCOSEPP-RXN]]
+
* With common name(s):
−
== Reaction(s) not found ==
+
** 1 oxygen[c] '''+''' 2 H+[c] '''+''' 1 coproporphyrinogen III[c] '''=>''' 2 H2O[c] '''+''' 1 protoporphyrinogen IX[c] '''+''' 2 CO2[c]
−
* '''4''' reaction(s) not found
+
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12773 RXN-12773]
+
== Genes associated with this reaction  ==
−
** [http://metacyc.org/META/NEW-IMAGE?object=RXN-16841 RXN-16841]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12839 RXN-12839]
+
* Gene: [[Tiso_gene_3671]]
−
** [http://metacyc.org/META/NEW-IMAGE?object=RXN-12811 RXN-12811]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_2247]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_13364]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13365]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2246]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2}}
+
* RHEA:
−
{{#set: common name=dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
−
{{#set: reaction found=2}}
+
* LIGAND-RXN:
−
{{#set: reaction not found=4}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
 +
** [http://www.uniprot.org/uniprot/P36552 P36552]
 +
** [http://www.uniprot.org/uniprot/O25376 O25376]
 +
** [http://www.uniprot.org/uniprot/P36553 P36553]
 +
** [http://www.uniprot.org/uniprot/P33771 P33771]
 +
** [http://www.uniprot.org/uniprot/P43899 P43899]
 +
** [http://www.uniprot.org/uniprot/O25824 O25824]
 +
** [http://www.uniprot.org/uniprot/P54304 P54304]
 +
** [http://www.uniprot.org/uniprot/P11353 P11353]
 +
** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
 +
** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
 +
** [http://www.uniprot.org/uniprot/P36551 P36551]
 +
** [http://www.uniprot.org/uniprot/P35055 P35055]
 +
** [http://www.uniprot.org/uniprot/P43898 P43898]
 +
** [http://www.uniprot.org/uniprot/P72848 P72848]
 +
** [http://www.uniprot.org/uniprot/P73245 P73245]
 +
** [http://www.uniprot.org/uniprot/P74132 P74132]
 +
** [http://www.uniprot.org/uniprot/Q51676 Q51676]
 +
** [http://www.uniprot.org/uniprot/Q42946 Q42946]
 +
** [http://www.uniprot.org/uniprot/Q42840 Q42840]
 +
** [http://www.uniprot.org/uniprot/Q39581 Q39581]
 +
** [http://www.uniprot.org/uniprot/P95651 P95651]
 +
** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=coproporphyrinogen-iii_oxidase}}
 +
{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
 +
{{#set: common name=coproporphyrinogen_oxidase}}
 +
{{#set: ec number=EC-1.3.3.3}}
 +
{{#set: gene associated=Tiso_gene_3671|Tiso_gene_2247|Tiso_gene_13364|Tiso_gene_13365|Tiso_gene_2246}}
 +
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:27, 21 March 2018

Reaction RXN0-1461

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • coproporphyrinogen-iii_oxidase
    • coproporphyrinogen_iii_oxidase_chloroplast
    • coproporphyrinogen_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1415, superpathway of heme biosynthesis from uroporphyrinogen-III: PWY0-1415
    • 5 reactions found over 6 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme biosynthesis I (aerobic): HEME-BIOSYNTHESIS-II
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-1461&oldid=41765"