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| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == | + | == Gene Tiso_gene_20543 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 1028 |
| − | * common name: | + | * transcription direction: |
| − | ** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase | + | ** POSITIVE |
| − | ** polyketide_synthase
| + | * left end position: |
| − | * ec number: | + | ** 618 |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86] | + | * centisome position: |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85] | + | ** 53.138435 |
| − | ** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59] | + | |
| | * Synonym(s): | | * Synonym(s): |
| − | ** crotonoyl-[acyl-carrier-protein] hydratase
| |
| − | ** β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
| |
| − | ** β-hydroxybutyryl acyl carrier protein dehydrase
| |
| − | ** enoyl acyl carrier protein hydrase
| |
| − | ** crotonyl acyl carrier protein hydratase
| |
| − | ** 3-hydroxybutyryl acyl carrier protein dehydratase
| |
| − | ** β-hydroxybutyryl acyl carrier protein dehydrase
| |
| − | ** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
| |
| − | ** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
| |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers:
| + | * Reaction: [[RNA-DIRECTED-DNA-POLYMERASE-RXN]] |
| − | ** 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Crotonyl-ACPs]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 a (3R)-3-hydroxybutanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a crotonyl-[acp][c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_135]] | + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_13394]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_6884]]
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***AUTOMATED-NAME-MATCH
| + | |
| − | * [[Tiso_gene_136]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_10876]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_500]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
| + | |
| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
| + | |
| − | * [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
| + | |
| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
| + | |
| − | * [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
| + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Tool: [[pathwaytools]] | + | *** Assignment: ec-number |
| | + | == Pathways associated == |
| | == External links == | | == External links == |
| − | * LIGAND-RXN:
| + | {{#set: right end position=1028}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
| + | {{#set: transcription direction=POSITIVE}} |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | {{#set: left end position=618}} |
| − | {{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}} | + | {{#set: centisome position=53.138435 }} |
| − | {{#set: common name=polyketide_synthase}} | + | {{#set: reaction associated=RNA-DIRECTED-DNA-POLYMERASE-RXN}} |
| − | {{#set: ec number=EC-2.3.1.86}} | + | |
| − | {{#set: ec number=EC-2.3.1.85}} | + | |
| − | {{#set: ec number=EC-4.2.1.59}}
| + | |
| − | {{#set: common name=crotonoyl-[acyl-carrier-protein] hydratase|β-hydroxybutyryl acyl carrier protein (ACP) dehydrase|β-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|crotonyl acyl carrier protein hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|β-hydroxybutyryl acyl carrier protein dehydrase|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
| + | |
| − | {{#set: gene associated=Tiso_gene_135|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_500}}
| + | |
| − | {{#set: in pathway=PWY-5971|PWY-5994|PWY-7388}}
| + | |
| − | {{#set: reconstruction category=manual|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
