Difference between revisions of "ORNCARBAMTRANSFER-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_11164 == * left end position: ** 2174 * transcription direction: ** POSITIVE * right end position: ** 3854 * centisome position: ** 27.2328...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_11164 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] ==
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* left end position:
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* direction:
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** 2174
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** REVERSIBLE
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* transcription direction:
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* ec number:
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** POSITIVE
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** [http://enzyme.expasy.org/EC/2.1.3.3 EC-2.1.3.3]
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* right end position:
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** 3854
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* centisome position:
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** 27.23287   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[OROPRIBTRANS-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 carbamoyl phosphate[c] '''+''' 1 L-ornithine[c] '''<=>''' 1 L-citrulline[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
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* [[PWY-7790]]
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* [[PWY-7791]]
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== Genes associated with this reaction  ==
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* [[PWY-5686]]
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18444]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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== Pathways ==
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* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
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** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[CITRULLINE-DEG-PWY]], L-citrulline degradation: [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2174}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19513 19513]
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{{#set: right end position=3854}}
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* LIGAND-RXN:
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{{#set: centisome position=27.23287    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398]
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{{#set: reaction associated=OROPRIBTRANS-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7790|PWY-7791|PWY-5686}}
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** [http://www.uniprot.org/uniprot/Q58291 Q58291]
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** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1]
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** [http://www.uniprot.org/uniprot/Q7M182 Q7M182]
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** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4]
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** [http://www.uniprot.org/uniprot/P11727 P11727]
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** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4]
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** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14]
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** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6]
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** [http://www.uniprot.org/uniprot/P44770 P44770]
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** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9]
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** [http://www.uniprot.org/uniprot/P11066 P11066]
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** [http://www.uniprot.org/uniprot/P11803 P11803]
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** [http://www.uniprot.org/uniprot/P18186 P18186]
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** [http://www.uniprot.org/uniprot/P05150 P05150]
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** [http://www.uniprot.org/uniprot/P14995 P14995]
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** [http://www.uniprot.org/uniprot/P06960 P06960]
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** [http://www.uniprot.org/uniprot/P04391 P04391]
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** [http://www.uniprot.org/uniprot/P00480 P00480]
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** [http://www.uniprot.org/uniprot/P11725 P11725]
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** [http://www.uniprot.org/uniprot/P21302 P21302]
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** [http://www.uniprot.org/uniprot/P11724 P11724]
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** [http://www.uniprot.org/uniprot/P08308 P08308]
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** [http://www.uniprot.org/uniprot/P68747 P68747]
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** [http://www.uniprot.org/uniprot/P00481 P00481]
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** [http://www.uniprot.org/uniprot/P31317 P31317]
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** [http://www.uniprot.org/uniprot/Q01322 Q01322]
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** [http://www.uniprot.org/uniprot/Q01323 Q01323]
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** [http://www.uniprot.org/uniprot/Q01324 Q01324]
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** [http://www.uniprot.org/uniprot/Q01326 Q01326]
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** [http://www.uniprot.org/uniprot/Q01325 Q01325]
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** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3]
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** [http://www.uniprot.org/uniprot/Q01327 Q01327]
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** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9]
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** [http://www.uniprot.org/uniprot/Q02047 Q02047]
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** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9]
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** [http://www.uniprot.org/uniprot/Q48296 Q48296]
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** [http://www.uniprot.org/uniprot/P75473 P75473]
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** [http://www.uniprot.org/uniprot/Q49080 Q49080]
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** [http://www.uniprot.org/uniprot/Q43814 Q43814]
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** [http://www.uniprot.org/uniprot/O53089 O53089]
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** [http://www.uniprot.org/uniprot/O50039 O50039]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.1.3.3}}
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{{#set: gene associated=Tiso_gene_18444}}
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{{#set: in pathway=ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4981|PWY-7400|CITRULLINE-DEG-PWY|CITRULBIO-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:52, 21 March 2018

Reaction ORNCARBAMTRANSFER-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 carbamoyl phosphate[c] + 1 L-ornithine[c] <=> 1 L-citrulline[c] + 1 H+[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine): PWY-4981
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • CITRULLINE-DEG-PWY, L-citrulline degradation: CITRULLINE-DEG-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ORNCARBAMTRANSFER-RXN&oldid=44328"