Difference between revisions of "RXN-12518"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12518 RXN-12518] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase * e...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPTOPHAN--TRNA-LIGASE-RXN TRYPTOPHAN--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12518 RXN-12518] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** tryptophan--trna_ligase
+
** acyl-coenzyme_a_oxidase
−
** tryptophan--trna_cytoplasmic
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.2 EC-6.1.1.2]
+
** [http://enzyme.expasy.org/EC/1.3.3.6 EC-1.3.3.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[TRP]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[TRP-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-TRP-tRNAs]][c]
+
** 1 [[cis-5-enoyl-CoA]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[trans-2-cis-5-dienoyl-CoA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-tryptophan[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAtrp[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-tryptophanyl-[tRNAtrp][c]
+
** 1 a cis-5-enoyl-CoA[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 a trans2,cis-5-dienoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14318]]
+
* Gene: [[Tiso_gene_18566]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_14319]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12988]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-6837]], fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6837 PWY-6837]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 41: Line 30:
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24080 24080]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03664 R03664]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P23381 P23381]
 
−
** [http://www.uniprot.org/uniprot/Q9ZD76 Q9ZD76]
 
−
** [http://www.uniprot.org/uniprot/O84589 O84589]
 
−
** [http://www.uniprot.org/uniprot/Q9PIB4 Q9PIB4]
 
−
** [http://www.uniprot.org/uniprot/Q9CJD1 Q9CJD1]
 
−
** [http://www.uniprot.org/uniprot/P43835 P43835]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7A4 Q9Z7A4]
 
−
** [http://www.uniprot.org/uniprot/Q9WYW2 Q9WYW2]
 
−
** [http://www.uniprot.org/uniprot/O26352 O26352]
 
−
** [http://www.uniprot.org/uniprot/O51038 O51038]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJX4 Q9ZJX4]
 
−
** [http://www.uniprot.org/uniprot/Q9JTQ0 Q9JTQ0]
 
−
** [http://www.uniprot.org/uniprot/Q58810 Q58810]
 
−
** [http://www.uniprot.org/uniprot/O83640 O83640]
 
−
** [http://www.uniprot.org/uniprot/P67590 P67590]
 
−
** [http://www.uniprot.org/uniprot/O67115 O67115]
 
−
** [http://www.uniprot.org/uniprot/P47372 P47372]
 
−
** [http://www.uniprot.org/uniprot/P32921 P32921]
 
−
** [http://www.uniprot.org/uniprot/Q12109 Q12109]
 
−
** [http://www.uniprot.org/uniprot/Q49901 Q49901]
 
−
** [http://www.uniprot.org/uniprot/P75510 P75510]
 
−
** [http://www.uniprot.org/uniprot/O42875 O42875]
 
−
** [http://www.uniprot.org/uniprot/O96771 O96771]
 
−
** [http://www.uniprot.org/uniprot/P17248 P17248]
 
−
** [http://www.uniprot.org/uniprot/P21656 P21656]
 
−
** [http://www.uniprot.org/uniprot/P04803 P04803]
 
−
** [http://www.uniprot.org/uniprot/P00954 P00954]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=tryptophan--trna_ligase}}
+
{{#set: common name=acyl-coenzyme_a_oxidase}}
−
{{#set: common name=tryptophan--trna_cytoplasmic}}
+
{{#set: ec number=EC-1.3.3.6}}
−
{{#set: ec number=EC-6.1.1.2}}
+
{{#set: gene associated=Tiso_gene_18566}}
−
{{#set: gene associated=Tiso_gene_14318|Tiso_gene_14319|Tiso_gene_12988}}
+
{{#set: in pathway=PWY-6837}}
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:53, 21 March 2018

Reaction RXN-12518

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl-coenzyme_a_oxidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6837, fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent): PWY-6837
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12518&oldid=44371"