Difference between revisions of "RXN-11501"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-476-CPD-14719/NAD/WATER//CPD-7830/NADH/PROTON.42. RXN66-476-CPD-14719/NAD/WATER//CPD-7830/NAD...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11501 RXN-11501] == * direction: ** LEFT-TO-RIGHT * common name: ** alpha-galactosidase * ec nu...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-476-CPD-14719/NAD/WATER//CPD-7830/NADH/PROTON.42. RXN66-476-CPD-14719/NAD/WATER//CPD-7830/NADH/PROTON.42.] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11501 RXN-11501] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** alpha-galactosidase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.2.1.22 EC-3.2.1.22]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[CPD-14719]][c] '''+''' 1.0 [[NAD]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 2.0 [[PROTON]][c] '''+''' 1.0 [[CPD-7830]][c] '''+''' 1.0 [[NADH]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-170]][c] '''=>''' 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[CPD-1099]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 heptadecanal[c] '''+''' 1.0 NAD+[c] '''+''' 1.0 H2O[c] '''=>''' 2.0 H+[c] '''+''' 1.0 heptadecanoate[c] '''+''' 1.0 NADH[c]
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** 1 H2O[c] '''+''' 1 stachyose[c] '''=>''' 1 α-D-galactose[c] '''+''' 1 raffinose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_16101]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_4615]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_8673]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_3392]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-athaliana]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[gap-filling]]
+
* Category: [[orthology]]
−
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
+
** Source: [[orthology-athaliana]]
−
*** Tool: [[meneco]]
+
*** Tool: [[pantograph]]
−
**** Comment: [[added for gapfilling]]
+
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03634 R03634]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=alpha-galactosidase}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: ec number=EC-3.2.1.22}}
−
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: gene associated=Tiso_gene_16101|Tiso_gene_4615|Tiso_gene_8673|Tiso_gene_3392}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: in pathway=PWY-6527}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:54, 21 March 2018

Reaction RXN-11501

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • alpha-galactosidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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