Difference between revisions of "2.7.9.3-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_5901 == * left end position: ** 5949 * transcription direction: ** NEGATIVE * right end position: ** 6950 * centisome position: ** 46.50199...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.9.3-RXN 2.7.9.3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** selenophosphate_synthet...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_5901 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.9.3-RXN 2.7.9.3-RXN] ==
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* left end position:
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* direction:
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** 5949
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** selenophosphate_synthetase
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* right end position:
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* ec number:
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** 6950
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** [http://enzyme.expasy.org/EC/2.7.9.3 EC-2.7.9.3]
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* centisome position:
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** 46.501995   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[6PGLUCONOLACT-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[SE-2]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[SEPO3]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 selenide[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 AMP[c] '''+''' 1 selenophosphate[c]
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***ec-number
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[P122-PWY]]
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* Gene: [[Tiso_gene_5669]]
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* [[RUMP-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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* [[OXIDATIVEPENT-PWY]]
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*** Assignment: EC-NUMBER
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* [[GLYCOLYSIS-E-D]]
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* Gene: [[Tiso_gene_5668]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_14608]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=5949}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18737 18737]
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{{#set: right end position=6950}}
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* LIGAND-RXN:
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{{#set: centisome position=46.501995    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03595 R03595]
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{{#set: reaction associated=6PGLUCONOLACT-RXN}}
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* UNIPROT:
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{{#set: pathway associated=P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}}
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** [http://www.uniprot.org/uniprot/Q9PMF9 Q9PMF9]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=selenophosphate_synthetase}}
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{{#set: ec number=EC-2.7.9.3}}
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{{#set: gene associated=Tiso_gene_5669|Tiso_gene_5668|Tiso_gene_14608}}
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{{#set: in pathway=PWY0-901|PWY-6281}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:54, 21 March 2018

Reaction 2.7.9.3-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • selenophosphate_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 selenide[c] + 1 ATP[c] + 1 H2O[c] => 1 phosphate[c] + 1 AMP[c] + 1 selenophosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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