Difference between revisions of "Tiso gene 5715"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9526 RXN-9526] == * direction: ** LEFT-TO-RIGHT * common name: ** trans oct-2-enoyl-[acyl-carri...")
(Created page with "Category:Gene == Gene Tiso_gene_5715 == * right end position: ** 12421 * transcription direction: ** POSITIVE * left end position: ** 10289 * centisome position: ** 78.885...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9526 RXN-9526] ==
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== Gene Tiso_gene_5715 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 12421
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* common name:
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* transcription direction:
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** trans oct-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)
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** POSITIVE
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** polyketide_synthase
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* left end position:
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* ec number:
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** 10289
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** [http://enzyme.expasy.org/EC/1.3.1.10 EC-1.3.1.10]
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.3.1.39 EC-1.3.1.39]
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** 78.88523   
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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* Synonym(s):
 
* Synonym(s):
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** trans oct-2-enoyl-ACP reductase
 
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** trans oct-2-enoyl acyl-carrier-protein reductase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.4.11.18-RXN]]
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** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[2-Octenoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Octanoyl-ACPs]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 a trans oct-2-enoyl-[acp][c] '''=>''' 1 NADP+[c] '''+''' 1 an octanoyl-[acp][c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-17873]]
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* [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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* [[Tiso_gene_10876]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-17874]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_500]]
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*** Assignment: automated-name-match
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: automated-name-match
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* [[Tiso_gene_135]]
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* Reaction: [[RXN-17875]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: automated-name-match
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* [[Tiso_gene_13394]]
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** Source: [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-17876]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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*** Assignment: automated-name-match
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** '''31''' reactions found over '''31''' reactions in the full pathway
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** Source: [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** Assignment: automated-name-match
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* Category: [[manual]]
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* Reaction: [[RXN-17877]]
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** Source: [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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* Category: [[annotation]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17878]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-7799]]
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* [[PWY-7800]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=12421}}
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{{#set: common name=trans oct-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: left end position=10289}}
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{{#set: ec number=EC-1.3.1.10}}
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{{#set: centisome position=78.88523    }}
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{{#set: ec number=EC-1.3.1.39}}
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{{#set: reaction associated=3.4.11.18-RXN|RXN-17873|RXN-17874|RXN-17875|RXN-17876|RXN-17877|RXN-17878}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: pathway associated=PWY-7799|PWY-7800}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: common name=trans oct-2-enoyl-ACP reductase|trans oct-2-enoyl acyl-carrier-protein reductase}}
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_135|Tiso_gene_13394}}
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{{#set: in pathway=PWY-5994}}
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{{#set: reconstruction category=manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 19:55, 21 March 2018

Gene Tiso_gene_5715

  • right end position:
    • 12421
  • transcription direction:
    • POSITIVE
  • left end position:
    • 10289
  • centisome position:
    • 78.88523
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5715&oldid=44668"