Difference between revisions of "FPPSYN-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_17718 == * left end position: ** 372 * transcription direction: ** POSITIVE * right end position: ** 3165 * centisome position: ** 10.62857...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/E...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_17718 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] ==
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* left end position:
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* direction:
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** 372
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** POSITIVE
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** [http://enzyme.expasy.org/EC/2.5.1.10 EC-2.5.1.10]
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* right end position:
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** 3165
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−
* centisome position:
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** 10.6285715   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3-SULFINOALANINE-AMINOTRANSFERASE-RXN]]
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* With identifiers:
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** [[pantograph]]-[[athaliana]]
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[FARNESYL-PP]][c]
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** [[pantograph]]-[[esiliculosus]]
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* With common name(s):
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* [[ASPAMINOTRANS-RXN]]
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** 1 isopentenyl diphosphate[c] '''+''' 1 geranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_16284]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-synechocystis]]
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* [[CYSTEINE-AMINOTRANSFERASE-RXN]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[athaliana]]
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== Pathways ==
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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** [[pantograph]]-[[creinhardtii]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PHEAMINOTRANS-RXN]]
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* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
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** [[pantograph]]-[[athaliana]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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** [[pantograph]]-[[creinhardtii]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[RXN-10814]]
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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** experimental_annotation
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** '''3''' reactions found over '''6''' reactions in the full pathway
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***ec-number
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** [[pantograph]]-[[esiliculosus]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[RXN-11737]]
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== Reconstruction information  ==
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** experimental_annotation
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* Category: [[orthology]]
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***ec-number
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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*** Tool: [[pantograph]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-synechocystis]]
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* [[RXN-13697]]
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*** Tool: [[pantograph]]
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** experimental_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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*** Tool: [[pantograph]]
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** [[pantograph]]-[[esiliculosus]]
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* Category: [[manual]]
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* [[TYROSINE-AMINOTRANSFERASE-RXN]]
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** Source: [[manual-primary_network]]
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** [[pantograph]]-[[creinhardtii]]
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−
== Pathways associated ==
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* [[TYRSYN]]
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−
* [[PWY-7383]]
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−
* [[ASPARTATESYN-PWY]]
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−
* [[PWY-7117]]
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−
* [[PWY-7115]]
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−
* [[PWY-5754]]
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−
* [[PWY-5329]]
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−
* [[PWY-5048]]
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−
* [[PWY-5913]]
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−
* [[CYSTEINE-DEG-PWY]]
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−
* [[PWY-6643]]
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* [[PWY-6642]]
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−
* [[PWY-7432]]
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−
* [[PWY-7518]]
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−
* [[ANAPHENOXI-PWY]]
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−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
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−
* [[TYRFUMCAT-PWY]]
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−
* [[PWY-3581]]
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−
* [[ASPARTATE-DEG1-PWY]]
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−
* [[PWY0-1534]]
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−
* [[PWY-5886]]
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* [[GLUTDEG-PWY]]
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* [[PWY-6318]]
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* [[PWY-5079]]
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−
* [[PWY-7514]]
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−
* [[PWY3O-4108]]
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* [[PHESYN]]
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* [[PWY-6638]]
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* [[ASPARAGINE-DEG1-PWY-1]]
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* [[PWY-5151]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=372}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
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{{#set: right end position=3165}}
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* LIGAND-RXN:
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{{#set: centisome position=10.6285715    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
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{{#set: reaction associated=3-SULFINOALANINE-AMINOTRANSFERASE-RXN|ASPAMINOTRANS-RXN|CYSTEINE-AMINOTRANSFERASE-RXN|PHEAMINOTRANS-RXN|RXN-10814|RXN-11737|RXN-13697|TYROSINE-AMINOTRANSFERASE-RXN}}
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* UNIPROT:
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{{#set: pathway associated=TYRSYN|PWY-7383|ASPARTATESYN-PWY|PWY-7117|PWY-7115|PWY-5754|PWY-5329|PWY-5048|PWY-5913|CYSTEINE-DEG-PWY|PWY-6643|PWY-6642|PWY-7432|PWY-7518|ANAPHENOXI-PWY|MALATE-ASPARTATE-SHUTTLE-PWY|TYRFUMCAT-PWY|PWY-3581|ASPARTATE-DEG1-PWY|PWY0-1534|PWY-5886|GLUTDEG-PWY|PWY-6318|PWY-5079|PWY-7514|PWY3O-4108|PHESYN|PWY-6638|ASPARAGINE-DEG1-PWY-1|PWY-5151}}
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** [http://www.uniprot.org/uniprot/P08524 P08524]
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** [http://www.uniprot.org/uniprot/P05369 P05369]
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** [http://www.uniprot.org/uniprot/P14324 P14324]
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** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
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** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
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** [http://www.uniprot.org/uniprot/P45204 P45204]
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** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
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** [http://www.uniprot.org/uniprot/P49350 P49350]
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** [http://www.uniprot.org/uniprot/P22939 P22939]
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** [http://www.uniprot.org/uniprot/Q08291 Q08291]
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** [http://www.uniprot.org/uniprot/P49349 P49349]
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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** [http://www.uniprot.org/uniprot/P49351 P49351]
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** [http://www.uniprot.org/uniprot/P49352 P49352]
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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** [http://www.uniprot.org/uniprot/O24241 O24241]
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** [http://www.uniprot.org/uniprot/O24242 O24242]
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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** [http://www.uniprot.org/uniprot/P49353 P49353]
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** [http://www.uniprot.org/uniprot/O04882 O04882]
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** [http://www.uniprot.org/uniprot/O65004 O65004]
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** [http://www.uniprot.org/uniprot/O14230 O14230]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.5.1.10}}
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{{#set: gene associated=Tiso_gene_16284}}
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{{#set: in pathway=PWY-7736|PWY-7721|PWY-5123|PWY-7102|PWY-6859}}
 +
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=orthology-athaliana|manual-primary_network|orthology-esiliculosus|orthology-synechocystis}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 19:56, 21 March 2018

Reaction FPPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 geranyl diphosphate[c] => 1 diphosphate[c] + 1 (2E,6E)-farnesyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=FPPSYN-RXN&oldid=44761"