Difference between revisions of "RXN-1225"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.1.64-RXN 3.1.1.64-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans-retinyl-pal...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1225 RXN-1225] == * direction: ** LEFT-TO-RIGHT * common name: ** digalactosyldiacylglycerol_sy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.1.64-RXN 3.1.1.64-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1225 RXN-1225] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** all-trans-retinyl-palmitate hydrolase
+
** digalactosyldiacylglycerol_synthase
−
** ORF
+
−
** alpha_beta_hydrolase_fold_protein
+
−
** alpha_beta_hydrolase
+
−
** serine_esterase
+
−
** sialate_o-acetylesterase-like_protein
+
−
** lysophospholipase
+
−
** protein_chloroplastic
+
−
** para-nitrobenzyl_esterase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
+
** [http://enzyme.expasy.org/EC/2.4.1.241 EC-2.4.1.241]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CHOCOLA_A]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13524]][c] '''+''' 1 [[PALMITATE]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[D-Galactosyl-12-diacyl-glycerols]][c] '''+''' 1 [[CPD-14553]][c] '''=>''' 1 [[Galactosyl-galactosyl-diacyl-glycerols]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 all-trans-retinyl palmitate[c] '''+''' 1 H2O[c] '''=>''' 1 all-trans-retinol[c] '''+''' 1 palmitate[c] '''+''' 1 H+[c]
+
** 1 a 1,2-diacyl-3-O-(β-D-galactopyranosyl)-sn-glycerol[c] '''+''' 1 UDP-α-D-galactose[c] '''=>''' 1 an α,β-digalactosyldiacylglycerol[c] '''+''' 1 H+[c] '''+''' 1 UDP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1537]]
+
* Gene: [[Tiso_gene_2142]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_106]]
−
* [[Tiso_gene_4650]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: AUTOMATED-NAME-MATCH
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_11479]]
−
* [[Tiso_gene_12686]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
−
* [[Tiso_gene_10066]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17029]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11351]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_1538]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19778]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16518]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4606]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1922]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2556]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9429]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-401]], galactolipid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-401 PWY-401]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7666]], galactolipid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7666 PWY-7666]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 70: Line 37:
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13933 13933]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10520 10520]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02368 R02368]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04469 R04469]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=all-trans-retinyl-palmitate hydrolase}}
+
{{#set: common name=digalactosyldiacylglycerol_synthase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.4.1.241}}
−
{{#set: common name=alpha_beta_hydrolase_fold_protein}}
+
{{#set: gene associated=Tiso_gene_2142|Tiso_gene_106|Tiso_gene_11479}}
−
{{#set: common name=alpha_beta_hydrolase}}
+
{{#set: in pathway=PWY-401|PWY-7666}}
−
{{#set: common name=serine_esterase}}
+
−
{{#set: common name=sialate_o-acetylesterase-like_protein}}
+
−
{{#set: common name=lysophospholipase}}
+
−
{{#set: common name=protein_chloroplastic}}
+
−
{{#set: common name=para-nitrobenzyl_esterase}}
+
−
{{#set: ec number=EC-3.1.1.1}}
+
−
{{#set: gene associated=Tiso_gene_1537|Tiso_gene_4650|Tiso_gene_12686|Tiso_gene_10066|Tiso_gene_17029|Tiso_gene_11351|Tiso_gene_1538|Tiso_gene_19778|Tiso_gene_16518|Tiso_gene_4606|Tiso_gene_1922|Tiso_gene_2556|Tiso_gene_9429}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:57, 21 March 2018

Reaction RXN-1225

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • digalactosyldiacylglycerol_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-401, galactolipid biosynthesis I: PWY-401
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7666, galactolipid biosynthesis II: PWY-7666
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-1225&oldid=44913"