Difference between revisions of "RXN0-6427"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** beta-glucosidase-like_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6427 RXN0-6427] == * direction: ** LEFT-TO-RIGHT * common name: ** ca2+-activated_spot-like_pr...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8036 RXN-8036] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6427 RXN0-6427] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** ca2+-activated_spot-like_protein
−
** beta-glucosidase-like_chloroplastic
+
−
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
+
−
** beta_glucosidase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
+
** [http://enzyme.expasy.org/EC/3.1.7.2 EC-3.1.7.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-7417]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[CPD-7418]][c]
+
** 1 [[GDP-TP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[GTP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 cis-coumarinic acid-β-D-glucoside[c] '''+''' 1 H2O[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 coumarinate[c]
+
** 1 pppGpp[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 diphosphate[c] '''+''' 1 GTP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6007]]
+
* Gene: [[Tiso_gene_6799]]
−
** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
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*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
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−
***EC-NUMBER
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−
* [[Tiso_gene_6497]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_507]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
* [[Tiso_gene_6187]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6188]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5836]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_8669]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15066]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13306]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3467]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10001]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15067]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2843]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_2344]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13305]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5176]], coumarin biosynthesis (via 2-coumarate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5176 PWY-5176]
+
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31223 31223]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33055 33055]
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R04998 R04998]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=ca2+-activated_spot-like_protein}}
−
{{#set: common name=beta-glucosidase-like_chloroplastic}}
+
{{#set: ec number=EC-3.1.7.2}}
−
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
+
{{#set: gene associated=Tiso_gene_6799}}
−
{{#set: common name=beta_glucosidase}}
+
{{#set: in pathway=PPGPPMET-PWY}}
−
{{#set: ec number=EC-3.2.1.21}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: gene associated=Tiso_gene_6007|Tiso_gene_6497|Tiso_gene_507|Tiso_gene_6187|Tiso_gene_6188|Tiso_gene_5836|Tiso_gene_8669|Tiso_gene_15066|Tiso_gene_13306|Tiso_gene_3467|Tiso_gene_10001|Tiso_gene_15067|Tiso_gene_2843|Tiso_gene_2344|Tiso_gene_13305}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: in pathway=PWY-5176}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:58, 21 March 2018

Reaction RXN0-6427

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ca2+-activated_spot-like_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pppGpp[c] + 1 H2O[c] => 1 H+[c] + 1 diphosphate[c] + 1 GTP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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