Difference between revisions of "KETOISOCAPROATE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14229 RXN-14229] == * direction: ** REVERSIBLE * common name: ** acyl-coenzyme_a_oxidase ** acy...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOISOCAPROATE-RXN KETOISOCAPROATE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4-methy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14229 RXN-14229] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOISOCAPROATE-RXN KETOISOCAPROATE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** acyl-coenzyme_a_oxidase
+
** 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
−
** acyl-_dehydrogenase
+
** 2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial
−
** ORF
+
−
** acyl-CoA_dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.8.7 EC-1.3.8.7]
+
** [http://enzyme.expasy.org/EC/1.2.4.4 EC-1.2.4.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[CPD-196]][c] '''<=>''' 1 [[CPD0-2108]][c] '''+''' 1 [[ETF-Reduced]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[BCAA-dehydrogenase-3MB-DH-lipoyl]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 octanoyl-CoA[c] '''<=>''' 1 trans-oct-2-enoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
+
** 1 H+[c] '''+''' 1 4-methyl-2-oxopentanoate[c] '''+''' 1 an [apo BCAA dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''=>''' 1 CO2[c] '''+''' 1 a [apo BCAA dehydrogenase E2 protein] N6-S-[3-methylbutanoyl]dihydrolipoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17967]]
+
* Gene: [[Tiso_gene_18084]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_3260]]
−
* [[Tiso_gene_883]]
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_6475]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18566]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8272]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5991]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14511]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16631]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
Line 50: Line 31:
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30944 30944]
+
** [http://www.uniprot.org/uniprot/P21839 P21839]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/P21953 P21953]
−
** [http://www.genome.jp/dbget-bin/www_bget?R03777 R03777]
+
** [http://www.uniprot.org/uniprot/P37940 P37940]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
−
{{#set: common name=acyl-coenzyme_a_oxidase}}
+
** [http://www.uniprot.org/uniprot/P37941 P37941]
−
{{#set: common name=acyl-_dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P11178 P11178]
−
{{#set: common name=ORF}}
+
** [http://www.uniprot.org/uniprot/P12694 P12694]
−
{{#set: common name=acyl-CoA_dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P09061 P09061]
−
{{#set: ec number=EC-1.3.8.7}}
+
** [http://www.uniprot.org/uniprot/P09060 P09060]
−
{{#set: gene associated=Tiso_gene_17967|Tiso_gene_883|Tiso_gene_6475|Tiso_gene_18566|Tiso_gene_8272|Tiso_gene_5991|Tiso_gene_14511|Tiso_gene_16631}}
+
** [http://www.uniprot.org/uniprot/P11960 P11960]
 +
** [http://www.uniprot.org/uniprot/O84344 O84344]
 +
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
 +
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
 +
** [http://www.uniprot.org/uniprot/P35738 P35738]
 +
** [http://www.uniprot.org/uniprot/P50136 P50136]
 +
** [http://www.uniprot.org/uniprot/O48615 O48615]
 +
** [http://www.uniprot.org/uniprot/O03849 O03849]
 +
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 +
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 +
** [http://www.uniprot.org/uniprot/O82450 O82450]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=4-methyl-2-oxopentanoate dehydrogenase (lipoamide)}}
 +
{{#set: common name=2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial}}
 +
{{#set: ec number=EC-1.2.4.4}}
 +
{{#set: gene associated=Tiso_gene_18084|Tiso_gene_3260}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:58, 21 March 2018

Reaction KETOISOCAPROATE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
    • 2-oxoisovalerate_dehydrogenase_alpha_subunit_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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