Difference between revisions of "RXN-7737"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLYCERATE GLYCERATE] == * smiles: ** C(=O)([O-])C(O)CO * inchi key: ** InChIKey=RBNPOMFGQQGHHO-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7737 RXN-7737] == * direction: ** REVERSIBLE * common name: ** ll-diaminopimelate_chloroplastic...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLYCERATE GLYCERATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7737 RXN-7737] ==
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* smiles:
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* direction:
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** C(=O)([O-])C(O)CO
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** REVERSIBLE
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* inchi key:
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** InChIKey=RBNPOMFGQQGHHO-UWTATZPHSA-M
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* common name:
 
* common name:
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** D-glycerate
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** ll-diaminopimelate_chloroplastic
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* molecular weight:
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* ec number:
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** 105.07   
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** [http://enzyme.expasy.org/EC/2.6.1.83 EC-2.6.1.83]
 
* Synonym(s):
 
* Synonym(s):
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** (R)-glycerate
 
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** glycerate
 
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** D-glyceric acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[GLY3KIN-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[DELTA1-PIPERIDEINE-2-6-DICARBOXYLATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
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* [[RXN0-300]]
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* With common name(s):
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* [[GLYCERALDEHYDE-DEHYDRO-RXN]]
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** 1 2-oxoglutarate[c] '''+''' 1 L,L-diaminopimelate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 (S)-2,3,4,5-tetrahydrodipicolinate[c] '''+''' 1 H+[c] '''+''' 1 H2O[c]
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* [[R01747]]
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* [[GLYCERATE-DEHYDROGENASE-RXN]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN0-5289]]
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* Gene: [[Tiso_gene_18833]]
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* [[R01752]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 473-81-4
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* RHEA:
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* CAS : 6000-40-4
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23988 23988]
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* METABOLIGHTS : MTBLC16659
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R07613 R07613]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460358 5460358]
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{{#set: direction=REVERSIBLE}}
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* HMDB : HMDB00139
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{{#set: common name=ll-diaminopimelate_chloroplastic}}
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* LIGAND-CPD:
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{{#set: ec number=EC-2.6.1.83}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00258 C00258]
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{{#set: gene associated=Tiso_gene_18833}}
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* CHEMSPIDER:
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{{#set: in pathway=PWY-5097}}
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** [http://www.chemspider.com/Chemical-Structure.4573914.html 4573914]
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{{#set: reconstruction category=orthology|manual|annotation}}
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* CHEBI:
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16659 16659]
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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* BIGG : glyc__R
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{{#set: smiles=C(=O)([O-])C(O)CO}}
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{{#set: inchi key=InChIKey=RBNPOMFGQQGHHO-UWTATZPHSA-M}}
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{{#set: common name=D-glycerate}}
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{{#set: molecular weight=105.07    }}
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{{#set: common name=(R)-glycerate|glycerate|D-glyceric acid}}
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{{#set: consumed by=GLY3KIN-RXN}}
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{{#set: produced by=RXN0-300|GLYCERALDEHYDE-DEHYDRO-RXN|R01747|GLYCERATE-DEHYDROGENASE-RXN}}
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{{#set: reversible reaction associated=RXN0-5289|R01752}}
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Latest revision as of 19:58, 21 March 2018

Reaction RXN-7737

  • direction:
    • REVERSIBLE
  • common name:
    • ll-diaminopimelate_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5097, L-lysine biosynthesis VI: PWY-5097
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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