Difference between revisions of "2-ISOPROPYLMALATESYN-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10269 CPD-10269] == * smiles: ** CCCCCCC=CCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10269 CPD-10269] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] ==
−
* smiles:
+
* direction:
−
** CCCCCCC=CCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=QBYOCCWNZAOZTL-MDMKAECGSA-J
+
 
* common name:
 
* common name:
−
** palmitoleoyl-CoA
+
** 2-isopropylmalate_synthase_chloroplastic
−
* molecular weight:
+
* ec number:
−
** 999.899   
+
** [http://enzyme.expasy.org/EC/2.3.3.13 EC-2.3.3.13]
 
* Synonym(s):
 
* Synonym(s):
−
** 16:1-delta9-CoA
 
−
** 9z-hexadecenoyl-CoA
 
−
** cis-9-hexadecenoyl-CoA
 
−
** palmitoleoyl coenzyme A
 
−
** (9Z)-hexadec-9-enoyl-CoA
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN-17019]]
+
* With identifiers:
−
* [[RXN-17008]]
+
** 1 [[WATER]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c] '''=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
−
* [[RXN-17009]]
+
* With common name(s):
−
* [[RXN-17788]]
+
** 1 H2O[c] '''+''' 1 acetyl-CoA[c] '''+''' 1 3-methyl-2-oxobutanoate[c] '''=>''' 1 (2S)-2-isopropylmalate[c] '''+''' 1 coenzyme A[c] '''+''' 1 H+[c]
−
== Reaction(s) known to produce the compound ==
+
 
−
* [[RXN-17787]]
+
== Genes associated with this reaction  ==
−
* [[RXN0-7248]]
+
Genes have been associated with this reaction based on different elements listed below.
−
== Reaction(s) of unknown directionality ==
+
* Gene: [[Tiso_gene_11453]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25244393 25244393]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
−
* CHEBI:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=61540 61540]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
−
* METABOLIGHTS : MTBLC61540
+
* UNIPROT:
−
{{#set: smiles=CCCCCCC=CCCCCCCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
+
** [http://www.uniprot.org/uniprot/P06208 P06208]
−
{{#set: inchi key=InChIKey=QBYOCCWNZAOZTL-MDMKAECGSA-J}}
+
** [http://www.uniprot.org/uniprot/Q58595 Q58595]
−
{{#set: common name=palmitoleoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/P09151 P09151]
−
{{#set: molecular weight=999.899    }}
+
** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
−
{{#set: common name=16:1-delta9-CoA|9z-hexadecenoyl-CoA|cis-9-hexadecenoyl-CoA|palmitoleoyl coenzyme A|(9Z)-hexadec-9-enoyl-CoA}}
+
** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
−
{{#set: consumed by=RXN-17019|RXN-17008|RXN-17009|RXN-17788}}
+
** [http://www.uniprot.org/uniprot/Q58787 Q58787]
−
{{#set: produced by=RXN-17787|RXN0-7248}}
+
** [http://www.uniprot.org/uniprot/P94565 P94565]
 +
** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
 +
** [http://www.uniprot.org/uniprot/Q02141 Q02141]
 +
** [http://www.uniprot.org/uniprot/P48575 P48575]
 +
** [http://www.uniprot.org/uniprot/O86511 O86511]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=2-isopropylmalate_synthase_chloroplastic}}
 +
{{#set: ec number=EC-2.3.3.13}}
 +
{{#set: gene associated=Tiso_gene_11453}}
 +
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:59, 21 March 2018

Reaction 2-ISOPROPYLMALATESYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-isopropylmalate_synthase_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • LEUSYN-PWY, L-leucine biosynthesis: LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered): PWY-6871
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2-ISOPROPYLMALATESYN-RXN&oldid=45111"