Difference between revisions of "Tiso gene 15097"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MYRISTOYLACYLTRAN-RXN MYRISTOYLACYLTRAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** lip...")
(Created page with "Category:Gene == Gene Tiso_gene_15097 == * right end position: ** 7147 * transcription direction: ** POSITIVE * left end position: ** 5780 * centisome position: ** 74.5999...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MYRISTOYLACYLTRAN-RXN MYRISTOYLACYLTRAN-RXN] ==
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== Gene Tiso_gene_15097 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7147
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* common name:
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* transcription direction:
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** lipid_a_biosynthesis_acyltransferase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.3.1.243 EC-2.3.1.243]
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** 5780
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* centisome position:
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** 74.5999   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-15556]]
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** 1 [[Myristoyl-ACPs]][c] '''+''' 1 [[KDO2-LAUROYL-LIPID-IVA]][c] '''=>''' 1 [[KDO2-LIPID-A]][c] '''+''' 1 [[ACP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a myristoyl-[acp][c] '''+''' 1 α-Kdo-(2->4)-α-Kdo-(2->6)-(lauroyl)-lipid IVA[c] '''=>''' 1 α-D-Kdo-(2→4)-α-D-Kdo-(2→6)-lipid A[c] '''+''' 1 a holo-[acyl-carrier protein][c]
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* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_5065]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_14060]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[KDO-NAGLIPASYN-PWY]], superpathway of (Kdo)2-lipid A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=KDO-NAGLIPASYN-PWY KDO-NAGLIPASYN-PWY]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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* [[KDO-LIPASYN-PWY]], (Kdo)2-lipid A biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=KDO-LIPASYN-PWY KDO-LIPASYN-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7511]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=7147}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28438 28438]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5780}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05075 R05075]
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{{#set: centisome position=74.5999    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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{{#set: common name=lipid_a_biosynthesis_acyltransferase}}
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{{#set: pathway associated=PWY-7511}}
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{{#set: ec number=EC-2.3.1.243}}
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{{#set: gene associated=Tiso_gene_5065|Tiso_gene_14060}}
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{{#set: in pathway=KDO-NAGLIPASYN-PWY|KDO-LIPASYN-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:01, 21 March 2018

Gene Tiso_gene_15097

  • right end position:
    • 7147
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5780
  • centisome position:
    • 74.5999
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15097&oldid=45281"