Difference between revisions of "Tiso gene 14560"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAPOXNPHOSPHN-RXN GAPOXNPHOSPHN-RXN] == * direction: ** REVERSIBLE * common name: ** ORF * ec numbe...")
 
(Created page with "Category:Gene == Gene Tiso_gene_14560 == * right end position: ** 7920 * transcription direction: ** POSITIVE * left end position: ** 6015 * centisome position: ** 74.6555...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GAPOXNPHOSPHN-RXN GAPOXNPHOSPHN-RXN] ==
+
== Gene Tiso_gene_14560 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 7920
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/1.2.1.12 EC-1.2.1.12]
+
** 6015
 +
* centisome position:
 +
** 74.65558   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[DIACYLGLYKIN-RXN]]
−
** 1 [[Pi]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[DPG]][c] '''+''' 1 [[NADH]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 1,3-bisphospho-D-glycerate[c] '''+''' 1 NADH[c]
+
** Source: [[orthology-esiliculosus]]
−
 
+
* Reaction: [[NAD-KIN-RXN]]
−
== Genes associated with this reaction  ==
+
** Source: [[annotation-in-silico_annotation]]
−
Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_6766]]
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* Reaction: [[SPHINGANINE-KINASE-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* [[Tiso_gene_3344]]
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== Pathways associated ==
−
** IN-SILICO_ANNOTATION
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* [[PWY-7268]]
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***EC-NUMBER
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* [[PWY-7269]]
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* [[Tiso_gene_10646]]
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* [[PWY-7817]]
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** [[pantograph]]-[[athaliana]]
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* [[PWY-5129]]
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** [[pantograph]]-[[athaliana]]
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* [[PWY-5083]]
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** [[pantograph]]-[[synechocystis]]
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* [[NADPHOS-DEPHOS-PWY-1]]
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** [[pantograph]]-[[esiliculosus]]
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* [[PWY-7119]]
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY-7039]]
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** [[pantograph]]-[[creinhardtii]]
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* [[NADPHOS-DEPHOS-PWY]]
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* [[Tiso_gene_235]]
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−
** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[creinhardtii]]
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−
** [[pantograph]]-[[creinhardtii]]
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−
* [[Tiso_gene_20000]]
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−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways ==
+
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
+
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
+
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+
−
** '''8''' reactions found over '''12''' reactions in the full pathway
+
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
+
−
** '''11''' reactions found over '''15''' reactions in the full pathway
+
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
+
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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−
** '''11''' reactions found over '''11''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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−
** '''14''' reactions found over '''18''' reactions in the full pathway
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−
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
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−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
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−
*** [[synechocystis]]
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−
*** [[esiliculosus]]
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−
*** [[athaliana]]
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−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: right end position=7920}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10300 10300]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=6015}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01061 R01061]
+
{{#set: centisome position=74.65558    }}
−
* UNIPROT:
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{{#set: reaction associated=DIACYLGLYKIN-RXN|NAD-KIN-RXN|SPHINGANINE-KINASE-RXN}}
−
** [http://www.uniprot.org/uniprot/P07486 P07486]
+
{{#set: pathway associated=PWY-7268|PWY-7269|PWY-7817|PWY-5129|PWY-5083|NADPHOS-DEPHOS-PWY-1|PWY-7119|PWY-7039|NADPHOS-DEPHOS-PWY}}
−
** [http://www.uniprot.org/uniprot/P08477 P08477]
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−
** [http://www.uniprot.org/uniprot/P17878 P17878]
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−
** [http://www.uniprot.org/uniprot/Q01651 Q01651]
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** [http://www.uniprot.org/uniprot/Q27890 Q27890]
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** [http://www.uniprot.org/uniprot/Q27820 Q27820]
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** [http://www.uniprot.org/uniprot/Q7M188 Q7M188]
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** [http://www.uniprot.org/uniprot/Q7LZR1 Q7LZR1]
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** [http://www.uniprot.org/uniprot/Q58546 Q58546]
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** [http://www.uniprot.org/uniprot/P55971 P55971]
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** [http://www.uniprot.org/uniprot/P46795 P46795]
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** [http://www.uniprot.org/uniprot/P07487 P07487]
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** [http://www.uniprot.org/uniprot/Q01558 Q01558]
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** [http://www.uniprot.org/uniprot/Q7M187 Q7M187]
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−
** [http://www.uniprot.org/uniprot/O25902 O25902]
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−
** [http://www.uniprot.org/uniprot/Q9JWT8 Q9JWT8]
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−
** [http://www.uniprot.org/uniprot/P29272 P29272]
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** [http://www.uniprot.org/uniprot/P47543 P47543]
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−
** [http://www.uniprot.org/uniprot/O83816 O83816]
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** [http://www.uniprot.org/uniprot/P20445 P20445]
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** [http://www.uniprot.org/uniprot/P26517 P26517]
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** [http://www.uniprot.org/uniprot/P09124 P09124]
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** [http://www.uniprot.org/uniprot/P00362 P00362]
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** [http://www.uniprot.org/uniprot/P00358 P00358]
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** [http://www.uniprot.org/uniprot/P00359 P00359]
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** [http://www.uniprot.org/uniprot/P00360 P00360]
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** [http://www.uniprot.org/uniprot/P00356 P00356]
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** [http://www.uniprot.org/uniprot/P0A9B2 P0A9B2]
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** [http://www.uniprot.org/uniprot/P0A9B6 P0A9B6]
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** [http://www.uniprot.org/uniprot/P17721 P17721]
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** [http://www.uniprot.org/uniprot/P04406 P04406]
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** [http://www.uniprot.org/uniprot/P17244 P17244]
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** [http://www.uniprot.org/uniprot/P04796 P04796]
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** [http://www.uniprot.org/uniprot/P19089 P19089]
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−
** [http://www.uniprot.org/uniprot/P26518 P26518]
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−
** [http://www.uniprot.org/uniprot/P26988 P26988]
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−
** [http://www.uniprot.org/uniprot/P04970 P04970]
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** [http://www.uniprot.org/uniprot/P17329 P17329]
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** [http://www.uniprot.org/uniprot/P17330 P17330]
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−
** [http://www.uniprot.org/uniprot/P17331 P17331]
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−
** [http://www.uniprot.org/uniprot/P08439 P08439]
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** [http://www.uniprot.org/uniprot/P00357 P00357]
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** [http://www.uniprot.org/uniprot/P16858 P16858]
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** [http://www.uniprot.org/uniprot/P26521 P26521]
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−
** [http://www.uniprot.org/uniprot/P26520 P26520]
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** [http://www.uniprot.org/uniprot/P26519 P26519]
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** [http://www.uniprot.org/uniprot/P04797 P04797]
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** [http://www.uniprot.org/uniprot/P25861 P25861]
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** [http://www.uniprot.org/uniprot/P00361 P00361]
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** [http://www.uniprot.org/uniprot/P09317 P09317]
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** [http://www.uniprot.org/uniprot/P22512 P22512]
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** [http://www.uniprot.org/uniprot/P22513 P22513]
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−
** [http://www.uniprot.org/uniprot/P10097 P10097]
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** [http://www.uniprot.org/uniprot/P17819 P17819]
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** [http://www.uniprot.org/uniprot/P28844 P28844]
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** [http://www.uniprot.org/uniprot/P08735 P08735]
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** [http://www.uniprot.org/uniprot/P09316 P09316]
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** [http://www.uniprot.org/uniprot/Q9JX51 Q9JX51]
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** [http://www.uniprot.org/uniprot/O67161 O67161]
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** [http://www.uniprot.org/uniprot/P44304 P44304]
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** [http://www.uniprot.org/uniprot/O34425 O34425]
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** [http://www.uniprot.org/uniprot/P64178 P64178]
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** [http://www.uniprot.org/uniprot/Q46450 Q46450]
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** [http://www.uniprot.org/uniprot/P50321 P50321]
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** [http://www.uniprot.org/uniprot/P50322 P50322]
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** [http://www.uniprot.org/uniprot/P34917 P34917]
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** [http://www.uniprot.org/uniprot/P34918 P34918]
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** [http://www.uniprot.org/uniprot/Q07234 Q07234]
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** [http://www.uniprot.org/uniprot/P24748 P24748]
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** [http://www.uniprot.org/uniprot/P24746 P24746]
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** [http://www.uniprot.org/uniprot/P24749 P24749]
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** [http://www.uniprot.org/uniprot/P24751 P24751]
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** [http://www.uniprot.org/uniprot/P24750 P24750]
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** [http://www.uniprot.org/uniprot/Q60143 Q60143]
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** [http://www.uniprot.org/uniprot/Q64467 Q64467]
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** [http://www.uniprot.org/uniprot/P46406 P46406]
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** [http://www.uniprot.org/uniprot/Q59800 Q59800]
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** [http://www.uniprot.org/uniprot/P80534 P80534]
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** [http://www.uniprot.org/uniprot/Q9UW96 Q9UW96]
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** [http://www.uniprot.org/uniprot/P32809 P32809]
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** [http://www.uniprot.org/uniprot/P32810 P32810]
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** [http://www.uniprot.org/uniprot/P20287 P20287]
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** [http://www.uniprot.org/uniprot/P35143 P35143]
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** [http://www.uniprot.org/uniprot/P25858 P25858]
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** [http://www.uniprot.org/uniprot/P10618 P10618]
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** [http://www.uniprot.org/uniprot/Q7M517 Q7M517]
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** [http://www.uniprot.org/uniprot/Q7M516 Q7M516]
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** [http://www.uniprot.org/uniprot/Q09054 Q09054]
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** [http://www.uniprot.org/uniprot/Q43247 Q43247]
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** [http://www.uniprot.org/uniprot/P23722 P23722]
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** [http://www.uniprot.org/uniprot/P17729 P17729]
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** [http://www.uniprot.org/uniprot/Q01597 Q01597]
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** [http://www.uniprot.org/uniprot/P32637 P32637]
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** [http://www.uniprot.org/uniprot/P29497 P29497]
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** [http://www.uniprot.org/uniprot/P32638 P32638]
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** [http://www.uniprot.org/uniprot/P32635 P32635]
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** [http://www.uniprot.org/uniprot/P32636 P32636]
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** [http://www.uniprot.org/uniprot/Q59309 Q59309]
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** [http://www.uniprot.org/uniprot/P34783 P34783]
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** [http://www.uniprot.org/uniprot/Q00584 Q00584]
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** [http://www.uniprot.org/uniprot/Q42671 Q42671]
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** [http://www.uniprot.org/uniprot/P34920 P34920]
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** [http://www.uniprot.org/uniprot/P39460 P39460]
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** [http://www.uniprot.org/uniprot/Q37265 Q37265]
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** [http://www.uniprot.org/uniprot/Q37264 Q37264]
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** [http://www.uniprot.org/uniprot/Q01077 Q01077]
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** [http://www.uniprot.org/uniprot/P54270 P54270]
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** [http://www.uniprot.org/uniprot/Q48335 Q48335]
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** [http://www.uniprot.org/uniprot/Q43833 Q43833]
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** [http://www.uniprot.org/uniprot/Q59906 Q59906]
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** [http://www.uniprot.org/uniprot/P46713 P46713]
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** [http://www.uniprot.org/uniprot/P75358 P75358]
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** [http://www.uniprot.org/uniprot/Q7M2K2 Q7M2K2]
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** [http://www.uniprot.org/uniprot/Q43359 Q43359]
+
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** [http://www.uniprot.org/uniprot/O68075 O68075]
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** [http://www.uniprot.org/uniprot/Q08060 Q08060]
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** [http://www.uniprot.org/uniprot/O49222 O49222]
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** [http://www.uniprot.org/uniprot/P34922 P34922]
+
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** [http://www.uniprot.org/uniprot/O04106 O04106]
+
−
** [http://www.uniprot.org/uniprot/P49644 P49644]
+
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** [http://www.uniprot.org/uniprot/O32755 O32755]
+
−
** [http://www.uniprot.org/uniprot/P34924 P34924]
+
−
** [http://www.uniprot.org/uniprot/O59841 O59841]
+
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** [http://www.uniprot.org/uniprot/P78958 P78958]
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** [http://www.uniprot.org/uniprot/P54118 P54118]
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−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.2.1.12}}
+
−
{{#set: gene associated=Tiso_gene_6766|Tiso_gene_3344|Tiso_gene_10646|Tiso_gene_235|Tiso_gene_20000}}
+
−
{{#set: in pathway=PWY-1042|PWY66-399|GLUCONEO-PWY|SUCSYN-PWY|PWY-6901|P124-PWY|GLYCOLYSIS|ANAGLYCOLYSIS-PWY|PWY-5484|P185-PWY|P122-PWY|PWY-7003}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:29, 21 March 2018

Gene Tiso_gene_14560

  • right end position:
    • 7920
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6015
  • centisome position:
    • 74.65558
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14560&oldid=41885"