Difference between revisions of "RXN1G-262"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] == * direction: ** REVERSIBLE * common name: ** serine_hydroxyme...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-262 RXN1G-262] == * direction: ** LEFT-TO-RIGHT * common name: ** cis,cis-delta7,19-3-oxo-C38...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYOHMETRANS-RXN GLYOHMETRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-262 RXN1G-262] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** serine_hydroxymethyltransferase
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** cis,cis-delta7,19-3-oxo-C38:2-[acyl-carrier protein] reductase
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** serine_cytosolic-like_isoform_1
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−
** serine_hydroxymethyltransferase_mitochondrial
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−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.2.1 EC-2.1.2.1]
+
** [http://enzyme.expasy.org/EC/1.1.1.M9 EC-1.1.1.M9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[THF-GLU-N]][c] '''+''' 1 [[SER]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
+
** 1 [[NADPH]][c] '''+''' 1 [[cis-cis-D7-19-3-oxo-C38-2-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[cis-cis-D7-19-3-hydroxyC38-2-ACPs]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a tetrahydrofolate[c] '''+''' 1 L-serine[c] '''<=>''' 1 H2O[c] '''+''' 1 glycine[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c]
+
** 1 NADPH[c] '''+''' 1 a cis,cis-delta7,19-3-oxo-C38:2-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a cis,cis-delta7,19-3-hydroxyC38:2-[acp][c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16153]]
+
* Gene: [[Tiso_gene_13083]]
−
** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16154]]
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−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18652]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7776]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
+
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''86''' reactions found over '''182''' reactions in the full pathway
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
+
−
** '''5''' reactions found over '''13''' reactions in the full pathway
+
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
+
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
−
* [[GLYSYN-PWY]], glycine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-PWY GLYSYN-PWY]
+
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
+
−
** '''7''' reactions found over '''24''' reactions in the full pathway
+
−
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
+
−
** '''7''' reactions found over '''12''' reactions in the full pathway
+
−
* [[PWY-181]], photorespiration: [http://metacyc.org/META/NEW-IMAGE?object=PWY-181 PWY-181]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15481 15481]
+
{{#set: common name=cis,cis-delta7,19-3-oxo-C38:2-[acyl-carrier protein] reductase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-1.1.1.M9}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
+
{{#set: gene associated=Tiso_gene_13083}}
−
* UNIPROT:
+
{{#set: in pathway=PWYG-321}}
−
** [http://www.uniprot.org/uniprot/P35623 P35623]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P34898 P34898]
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P34899 P34899]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P34896 P34896]
+
−
** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
+
−
** [http://www.uniprot.org/uniprot/P34897 P34897]
+
−
** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
+
−
** [http://www.uniprot.org/uniprot/O23254 O23254]
+
−
** [http://www.uniprot.org/uniprot/O53441 O53441]
+
−
** [http://www.uniprot.org/uniprot/O08370 O08370]
+
−
** [http://www.uniprot.org/uniprot/P43844 P43844]
+
−
** [http://www.uniprot.org/uniprot/Q58992 Q58992]
+
−
** [http://www.uniprot.org/uniprot/O66776 O66776]
+
−
** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
+
−
** [http://www.uniprot.org/uniprot/P47634 P47634]
+
−
** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
+
−
** [http://www.uniprot.org/uniprot/P56089 P56089]
+
−
** [http://www.uniprot.org/uniprot/O53615 O53615]
+
−
** [http://www.uniprot.org/uniprot/O83349 O83349]
+
−
** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
+
−
** [http://www.uniprot.org/uniprot/O51547 O51547]
+
−
** [http://www.uniprot.org/uniprot/O84439 O84439]
+
−
** [http://www.uniprot.org/uniprot/P24531 P24531]
+
−
** [http://www.uniprot.org/uniprot/P39148 P39148]
+
−
** [http://www.uniprot.org/uniprot/P24060 P24060]
+
−
** [http://www.uniprot.org/uniprot/P37292 P37292]
+
−
** [http://www.uniprot.org/uniprot/P34895 P34895]
+
−
** [http://www.uniprot.org/uniprot/P34894 P34894]
+
−
** [http://www.uniprot.org/uniprot/P49357 P49357]
+
−
** [http://www.uniprot.org/uniprot/P49358 P49358]
+
−
** [http://www.uniprot.org/uniprot/P50433 P50433]
+
−
** [http://www.uniprot.org/uniprot/P37291 P37291]
+
−
** [http://www.uniprot.org/uniprot/P78011 P78011]
+
−
** [http://www.uniprot.org/uniprot/P77962 P77962]
+
−
** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
+
−
** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
+
−
** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
+
−
** [http://www.uniprot.org/uniprot/O23984 O23984]
+
−
** [http://www.uniprot.org/uniprot/P0A825 P0A825]
+
−
** [http://www.uniprot.org/uniprot/P07511 P07511]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=serine_hydroxymethyltransferase}}
+
−
{{#set: common name=serine_cytosolic-like_isoform_1}}
+
−
{{#set: common name=serine_hydroxymethyltransferase_mitochondrial}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-2.1.2.1}}
+
−
{{#set: gene associated=Tiso_gene_16153|Tiso_gene_16154|Tiso_gene_18652|Tiso_gene_7776}}
+
−
{{#set: in pathway=PWY-2161|PWY-1622|PWY-3841|1CMET2-PWY|PWY-3661|GLYSYN-PWY|PWY-5497|PWY-2201|PWY-181|PWY-3661-1}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:02, 21 March 2018

Reaction RXN1G-262

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cis,cis-delta7,19-3-oxo-C38:2-[acyl-carrier protein] reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWYG-321, mycolate biosynthesis: PWYG-321
    • 86 reactions found over 182 reactions in the full pathway

Reconstruction information

External links

"cis,cis-delta7,19-3-oxo-C38:2-[acyl-carrier protein] reductase" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1G-262&oldid=45390"