Difference between revisions of "Tiso gene 15144"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13697 RXN-13697] == * direction: ** REVERSIBLE * common name: ** aspartate_aminotransferase **...")
(Created page with "Category:Gene == Gene Tiso_gene_15144 == * right end position: ** 4970 * transcription direction: ** NEGATIVE * left end position: ** 46 * centisome position: ** 0.8834261...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13697 RXN-13697] ==
+
== Gene Tiso_gene_15144 ==
* direction:
+
* right end position:
** REVERSIBLE
+
** 4970
* common name:
+
* transcription direction:
** aspartate_aminotransferase
+
** NEGATIVE
** aminotransferase
+
* left end position:
* ec number:
+
** 46
** [http://enzyme.expasy.org/EC/2.6.1.1 EC-2.6.1.1]
+
* centisome position:
 +
** 0.88342613   
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
+
== Reactions associated ==
* With identifiers:
+
* Reaction: [[PYRUVATE-CARBOXYLASE-RXN]]
** 1 [[L-ASPARTATE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
+
* With common name(s):
+
** 1 L-aspartate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 oxaloacetate[c]
+
 
+
== Genes associated with this reaction  ==
+
Genes have been associated with this reaction based on different elements listed below.
+
* [[Tiso_gene_13538]]
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_17809]]
+
** IN-SILICO_ANNOTATION
+
***AUTOMATED-NAME-MATCH
+
* [[Tiso_gene_12889]]
+
** IN-SILICO_ANNOTATION
+
***AUTOMATED-NAME-MATCH
+
* [[Tiso_gene_6815]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_15680]]
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_17718]]
+
** EXPERIMENTAL_ANNOTATION
+
***EC-NUMBER
+
** [[pantograph]]-[[esiliculosus]]
+
== Pathways  ==
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
+
** '''7''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
+
** '''7''' reactions found over '''9''' reactions in the full pathway
+
== Reconstruction information  ==
+
* Category: [[orthology]]
+
** Source: [[orthology-esiliculosus]]
+
*** Tool: [[pantograph]]
+
* Category: [[annotation]]
+
** Source: [[annotation-experimental_annotation]]
+
*** Tool: [[pathwaytools]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
 +
== Pathways associated ==
 +
* [[PWY-6142]]
 +
* [[PWY-6146]]
 +
* [[P42-PWY]]
 +
* [[PWY-5750]]
 +
* [[PWY66-399]]
 
== External links  ==
 
== External links  ==
{{#set: direction=REVERSIBLE}}
+
{{#set: right end position=4970}}
{{#set: common name=aspartate_aminotransferase}}
+
{{#set: transcription direction=NEGATIVE}}
{{#set: common name=aminotransferase}}
+
{{#set: left end position=46}}
{{#set: ec number=EC-2.6.1.1}}
+
{{#set: centisome position=0.88342613    }}
{{#set: gene associated=Tiso_gene_13538|Tiso_gene_17809|Tiso_gene_12889|Tiso_gene_6815|Tiso_gene_15680|Tiso_gene_17718}}
+
{{#set: reaction associated=PYRUVATE-CARBOXYLASE-RXN}}
{{#set: in pathway=PWY-7117|PWY-7115}}
+
{{#set: pathway associated=PWY-6142|PWY-6146|P42-PWY|PWY-5750|PWY66-399}}
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:02, 21 March 2018

Gene Tiso_gene_15144

  • right end position:
    • 4970
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 46
  • centisome position:
    • 0.88342613
  • Synonym(s):

Reactions associated

Pathways associated

External links