Difference between revisions of "RXN-12200"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETAGALACTOSID-RXN BETAGALACTOSID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** β-ga...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12200 RXN-12200] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETAGALACTOSID-RXN BETAGALACTOSID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12200 RXN-12200] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** β-galactosidase
+
** ORF
−
** glycoside_hydrolase
+
−
** polyprotein
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.108 EC-3.2.1.108]
+
** [http://enzyme.expasy.org/EC/3.6.1.5 EC-3.6.1.5]
−
** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CPD-15972]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[GALACTOSE]][c]
+
** 1 [[CTP]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[CMP]][c] '''+''' 2 [[Pi]][c] '''+''' 2 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 lactose[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 β-D-galactose[c]
+
** 1 CTP[c] '''+''' 2 H2O[c] '''=>''' 1 CMP[c] '''+''' 2 phosphate[c] '''+''' 2 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17558]]
+
* Gene: [[Tiso_gene_20236]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_12899]]
−
* [[Tiso_gene_12839]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_1398]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[BGALACT-PWY]], lactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=BGALACT-PWY BGALACT-PWY]
+
* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7177]], UTP and CTP dephosphorylation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7177 PWY-7177]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10076 10076]
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28659 28659]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01100 R01100]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q29522 Q29522]
 
−
** [http://www.uniprot.org/uniprot/Q29521 Q29521]
 
−
** [http://www.uniprot.org/uniprot/Q29519 Q29519]
 
−
** [http://www.uniprot.org/uniprot/Q29518 Q29518]
 
−
** [http://www.uniprot.org/uniprot/P09849 P09849]
 
−
** [http://www.uniprot.org/uniprot/P09848 P09848]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=β-galactosidase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=glycoside_hydrolase}}
+
{{#set: ec number=EC-3.6.1.5}}
−
{{#set: common name=polyprotein}}
+
{{#set: gene associated=Tiso_gene_20236|Tiso_gene_12899}}
−
{{#set: ec number=EC-3.2.1.108}}
+
{{#set: in pathway=PWY-7185|PWY-7177}}
−
{{#set: ec number=EC-3.2.1.23}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: gene associated=Tiso_gene_17558|Tiso_gene_12839|Tiso_gene_1398}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: in pathway=BGALACT-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:02, 21 March 2018

Reaction RXN-12200

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 CTP[c] + 2 H2O[c] => 1 CMP[c] + 2 phosphate[c] + 2 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7185, UTP and CTP dephosphorylation I: PWY-7185
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7177, UTP and CTP dephosphorylation II: PWY-7177
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12200&oldid=45456"