Difference between revisions of "RXN0-5226"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** hyd...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5226 RXN0-5226] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-hexosaminidase * ec nu...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5226 RXN0-5226] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** hydroxymethylbilane_synthase
+
** beta-hexosaminidase
−
** uroporphyrinogen_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.61 EC-2.5.1.61]
+
** [http://enzyme.expasy.org/EC/3.2.1.52 EC-3.2.1.52]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 4 [[PORPHOBILINOGEN]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
+
** 1 [[CPD0-1081]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[N-ACETYL-D-GLUCOSAMINE]][c] '''+''' 1 [[CPD0-882]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 4 porphobilinogen[c] '''=>''' 4 ammonium[c] '''+''' 1 preuroporphyrinogen[c]
+
** 1 N-acetyl-β-D-glucosamine(anhydrous)-N-acetylmuramate[c] '''+''' 1 H2O[c] '''=>''' 1 N-acetyl-β-D-glucosamine[c] '''+''' 1 1,6-anhydro-N-acetyl-β-muramate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11630]]
+
* Gene: [[Tiso_gene_14122]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
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*** Assignment: EC-NUMBER
−
* [[Tiso_gene_14709]]
+
* Gene: [[Tiso_gene_1129]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
+
* [[PWY0-1261]], anhydromuropeptides recycling: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1261 PWY0-1261]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
+
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q57989 Q57989]
 
−
** [http://www.uniprot.org/uniprot/O29026 O29026]
 
−
** [http://www.uniprot.org/uniprot/P64336 P64336]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
 
−
** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
 
−
** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
 
−
** [http://www.uniprot.org/uniprot/P28464 P28464]
 
−
** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
 
−
** [http://www.uniprot.org/uniprot/P56140 P56140]
 
−
** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
 
−
** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
 
−
** [http://www.uniprot.org/uniprot/O26960 O26960]
 
−
** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
 
−
** [http://www.uniprot.org/uniprot/P06983 P06983]
 
−
** [http://www.uniprot.org/uniprot/P13446 P13446]
 
−
** [http://www.uniprot.org/uniprot/P08397 P08397]
 
−
** [http://www.uniprot.org/uniprot/P22907 P22907]
 
−
** [http://www.uniprot.org/uniprot/P19356 P19356]
 
−
** [http://www.uniprot.org/uniprot/Q43082 Q43082]
 
−
** [http://www.uniprot.org/uniprot/P40129 P40129]
 
−
** [http://www.uniprot.org/uniprot/P30527 P30527]
 
−
** [http://www.uniprot.org/uniprot/P28789 P28789]
 
−
** [http://www.uniprot.org/uniprot/Q60169 Q60169]
 
−
** [http://www.uniprot.org/uniprot/Q43316 Q43316]
 
−
** [http://www.uniprot.org/uniprot/Q49808 Q49808]
 
−
** [http://www.uniprot.org/uniprot/P73660 P73660]
 
−
** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
 
−
** [http://www.uniprot.org/uniprot/Q09899 Q09899]
 
−
** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=hydroxymethylbilane_synthase}}
+
{{#set: common name=beta-hexosaminidase}}
−
{{#set: common name=uroporphyrinogen_synthase}}
+
{{#set: ec number=EC-3.2.1.52}}
−
{{#set: ec number=EC-2.5.1.61}}
+
{{#set: gene associated=Tiso_gene_14122|Tiso_gene_1129}}
−
{{#set: gene associated=Tiso_gene_11630|Tiso_gene_14709}}
+
{{#set: in pathway=PWY0-1261}}
−
{{#set: in pathway=PWY-5189|PWY-5188}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:03, 21 March 2018

Reaction RXN0-5226

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-hexosaminidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 N-acetyl-β-D-glucosamine(anhydrous)-N-acetylmuramate[c] + 1 H2O[c] => 1 N-acetyl-β-D-glucosamine[c] + 1 1,6-anhydro-N-acetyl-β-muramate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1261, anhydromuropeptides recycling: PWY0-1261
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5226&oldid=45494"