Difference between revisions of "GDPMANDEHYDRA-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_14646 == * left end position: ** 1109 * transcription direction: ** NEGATIVE * right end position: ** 2190 * centisome position: ** 20.1015...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_14646 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
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* left end position:
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* direction:
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** 1109
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** GDP-mannose 4,6-dehydratase
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* right end position:
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* ec number:
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** 2190
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** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
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* centisome position:
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** 20.101503   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATPASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
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***ec-number
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* With common name(s):
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-α-D-rhamnose[c] '''+''' 1 H2O[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[RXN-12195]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_13093]]
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***ec-number
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** Source: [[orthology-athaliana]]
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* [[RXN-12196]]
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** Source: [[orthology-esiliculosus]]
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** in-silico_annotation
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* Gene: [[Tiso_gene_13092]]
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***ec-number
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** Source: [[annotation-experimental_annotation]]
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* [[RXN0-5462]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** in-silico_annotation
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== Pathways  ==
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***ec-number
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* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
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== Pathways associated ==
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7184]]
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* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
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* [[PWY-7198]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6545]]
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* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
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* [[PWY-7210]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1109}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
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{{#set: right end position=2190}}
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* LIGAND-RXN:
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{{#set: centisome position=20.101503    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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* UNIPROT:
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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** [http://www.uniprot.org/uniprot/Q84439 Q84439]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=GDP-mannose 4,6-dehydratase}}
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{{#set: ec number=EC-4.2.1.47}}
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{{#set: gene associated=Tiso_gene_13093|Tiso_gene_13092}}
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{{#set: in pathway=GDPRHAMSYN-PWY|PWY-66|PWY-5740|PWY-7573|PWY-5738|PWY-5739}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:03, 21 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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