Difference between revisions of "3.1.27.9-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_10567 == * left end position: ** 387 * transcription direction: ** NEGATIVE * right end position: ** 3279 * centisome position: ** 4.582593...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** trna_intron_ca...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_10567 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
−
* left end position:
+
* direction:
−
** 387
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** ORF
−
* right end position:
+
** trna_intron_catalytic_cterminal_subfamily_protein
−
** 3279
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
−
** 4.5825934   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
−
***ec-number
+
* With common name(s):
−
== Pathways associated ==
+
** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c] '''+''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_3776]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10338]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5254]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways ==
 +
* [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=387}}
+
* UNIPROT:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.uniprot.org/uniprot/O07118 O07118]
−
{{#set: right end position=3279}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: centisome position=4.5825934    }}
+
{{#set: common name=ORF}}
−
{{#set: reaction associated=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}}
+
{{#set: common name=trna_intron_catalytic_cterminal_subfamily_protein}}
 +
{{#set: ec number=EC-4.6.1.16}}
 +
{{#set: gene associated=Tiso_gene_3776|Tiso_gene_10338|Tiso_gene_5254}}
 +
{{#set: in pathway=PWY-6689|PWY-7803}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:29, 21 March 2018

Reaction 3.1.27.9-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • trna_intron_catalytic_cterminal_subfamily_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6689, tRNA splicing I: PWY-6689
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7803, tRNA splicing II: PWY-7803
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3.1.27.9-RXN&oldid=41925"