Difference between revisions of "Tiso gene 6799"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOLO-ACP-SYNTH-RXN HOLO-ACP-SYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 4_-phosph...")
(Created page with "Category:Gene == Gene Tiso_gene_6799 == * right end position: ** 11763 * transcription direction: ** NEGATIVE * left end position: ** 8738 * centisome position: ** 73.9443...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOLO-ACP-SYNTH-RXN HOLO-ACP-SYNTH-RXN] ==
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== Gene Tiso_gene_6799 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 11763
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* common name:
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* transcription direction:
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** 4_-phosphopantetheinyl_transferase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.7.8.7 EC-2.7.8.7]
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** 8738
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* centisome position:
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** 73.94432   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GDPPYPHOSKIN-RXN]]
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** 1 [[apo-ACP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 an apo-[acyl-carrier protein][c] '''+''' 1 coenzyme A[c] '''=>''' 1 adenosine 3',5'-bisphosphate[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 H+[c]
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* Reaction: [[GTPPYPHOSKIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[PPGPPSYN-RXN]]
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* [[Tiso_gene_14278]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN0-6427]]
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* [[Tiso_gene_12201]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6012-1]], acyl carrier protein activation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6012-1 PWY-6012-1]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-6012]], acyl carrier protein metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6012 PWY-6012]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PPGPPMET-PWY]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=11763}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01625 R01625]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: left end position=8738}}
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** [http://www.uniprot.org/uniprot/Q9PMP8 Q9PMP8]
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{{#set: centisome position=73.94432    }}
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** [http://www.uniprot.org/uniprot/P24224 P24224]
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{{#set: reaction associated=GDPPYPHOSKIN-RXN|GTPPYPHOSKIN-RXN|PPGPPSYN-RXN|RXN0-6427}}
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** [http://www.uniprot.org/uniprot/O84102 O84102]
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{{#set: pathway associated=PPGPPMET-PWY}}
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** [http://www.uniprot.org/uniprot/Q9RQW2 Q9RQW2]
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** [http://www.uniprot.org/uniprot/O83800 O83800]
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** [http://www.uniprot.org/uniprot/Q9ZCX5 Q9ZCX5]
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** [http://www.uniprot.org/uniprot/Q9ZL36 Q9ZL36]
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** [http://www.uniprot.org/uniprot/O25488 O25488]
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** [http://www.uniprot.org/uniprot/P96618 P96618]
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** [http://www.uniprot.org/uniprot/O66995 O66995]
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** [http://www.uniprot.org/uniprot/P0A4W8 P0A4W8]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=4_-phosphopantetheinyl_transferase}}
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{{#set: ec number=EC-2.7.8.7}}
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{{#set: gene associated=Tiso_gene_14278|Tiso_gene_12201}}
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{{#set: in pathway=PWY-6012-1|PWY-6012}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:05, 21 March 2018

Gene Tiso_gene_6799

  • right end position:
    • 11763
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 8738
  • centisome position:
    • 73.94432
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_6799&oldid=45810"