Difference between revisions of "KDO-8PSYNTH-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12303 CPD-12303] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDO-8PSYNTH-RXN KDO-8PSYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** bifunctional_kd...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12303 CPD-12303] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDO-8PSYNTH-RXN KDO-8PSYNTH-RXN] ==
−
* smiles:
+
* direction:
−
** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC[N+])C(NC(C)C(=O)[O-])=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=KCROFJGXXSCHGA-YGMFIXCYSA-K
+
 
* common name:
 
* common name:
−
** undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine
+
** bifunctional_kdo_8-p_synthase_dtdp-6-deoxy-l-hexose_3-o-methyltransferase
−
* molecular weight:
+
* ec number:
−
** 1598.955   
+
** [http://enzyme.expasy.org/EC/2.5.1.55 EC-2.5.1.55]
 
* Synonym(s):
 
* Synonym(s):
−
** mur2Ac(oyl-L-Ala-γ-D-Glu-L-Lys-D-Ala)-diphosphoundecaprenol
 
−
** lipid I (tetrapeptide)
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN-11347]]
+
** 1 [[CPD-18118]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[KDO-8P]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 D-arabinofuranose 5-phosphate[c] '''+''' 1 H2O[c] '''+''' 1 phosphoenolpyruvate[c] '''=>''' 1 phosphate[c] '''+''' 1 3-deoxy-D-manno-octulosonate 8-phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_1350]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_20348]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7674]], CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7674 PWY-7674]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-1269]], CMP-3-deoxy-D-manno-octulosonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1269 PWY-1269]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90657616 90657616]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14053 14053]
−
{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC1(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC[N+])C(NC(C)C(=O)[O-])=O)C(O)C(CO)O1))([O-])=O)C)C)C)C)C)C)C}}
+
* LIGAND-RXN:
−
{{#set: inchi key=InChIKey=KCROFJGXXSCHGA-YGMFIXCYSA-K}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03254 R03254]
−
{{#set: common name=undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine}}
+
* UNIPROT:
−
{{#set: molecular weight=1598.955    }}
+
** [http://www.uniprot.org/uniprot/Q9PIB8 Q9PIB8]
−
{{#set: common name=mur2Ac(oyl-L-Ala-γ-D-Glu-L-Lys-D-Ala)-diphosphoundecaprenol|lipid I (tetrapeptide)}}
+
** [http://www.uniprot.org/uniprot/P45251 P45251]
−
{{#set: produced by=RXN-11347}}
+
** [http://www.uniprot.org/uniprot/Q9JU48 Q9JU48]
 +
** [http://www.uniprot.org/uniprot/P0A715 P0A715]
 +
** [http://www.uniprot.org/uniprot/O50044 O50044]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=bifunctional_kdo_8-p_synthase_dtdp-6-deoxy-l-hexose_3-o-methyltransferase}}
 +
{{#set: ec number=EC-2.5.1.55}}
 +
{{#set: gene associated=Tiso_gene_1350|Tiso_gene_20348}}
 +
{{#set: in pathway=PWY-7674|PWY-1269}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:05, 21 March 2018

Reaction KDO-8PSYNTH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • bifunctional_kdo_8-p_synthase_dtdp-6-deoxy-l-hexose_3-o-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-arabinofuranose 5-phosphate[c] + 1 H2O[c] + 1 phosphoenolpyruvate[c] => 1 phosphate[c] + 1 3-deoxy-D-manno-octulosonate 8-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7674, CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis: PWY-7674
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-1269, CMP-3-deoxy-D-manno-octulosonate biosynthesis: PWY-1269
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=KDO-8PSYNTH-RXN&oldid=45820"