Difference between revisions of "Tiso gene 18748"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9673 RXN-9673] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long_c...")
(Created page with "Category:Gene == Gene Tiso_gene_18748 == * right end position: ** 1984 * transcription direction: ** NEGATIVE * left end position: ** 2 * centisome position: ** 7.09471460...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9673 RXN-9673] ==
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== Gene Tiso_gene_18748 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1984
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* common name:
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* transcription direction:
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** polyketide_synthase
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** NEGATIVE
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** long_chain_acyl-_synthetase
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* left end position:
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** acyl-_synthetase
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** 2
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** ORF
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* centisome position:
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* ec number:
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** 7.09471460e-2
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.1.1.274-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[LINOLEIC_ACID]][c] '''=>''' 1 [[CPD-18]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 linoleate[c] '''=>''' 1 linoleoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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* Reaction: [[ALDEHYDE-REDUCTASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[PYRIDOXINE-4-DEHYDROGENASE-RXN]]
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* [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-12078]]
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* [[Tiso_gene_136]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-14102]]
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* [[Tiso_gene_348]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-1884]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4191]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9394]]
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** IN-SILICO_ANNOTATION
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−
***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6000]], γ-linolenate biosynthesis II (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6000 PWY-6000]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-8772]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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* Reaction: [[RXN-8773]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
 +
== Pathways associated ==
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* [[PWY-6693]]
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* [[PWY-882]]
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* [[PWY-7204]]
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* [[KETOGLUCONMET-PWY]]
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* [[PWY-7282]]
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* [[PWY-7165]]
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* [[PWY-5515]]
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* [[PWY-5516]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1984}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33652 33652]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=2}}
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{{#set: common name=polyketide_synthase}}
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{{#set: centisome position=7.09471460e-2}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: reaction associated=1.1.1.274-RXN|ALDEHYDE-REDUCTASE-RXN|PYRIDOXINE-4-DEHYDROGENASE-RXN|RXN-12078|RXN-14102|RXN-1884|RXN-8772|RXN-8773}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: pathway associated=PWY-6693|PWY-882|PWY-7204|KETOGLUCONMET-PWY|PWY-7282|PWY-7165|PWY-5515|PWY-5516}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_136|Tiso_gene_348|Tiso_gene_13394|Tiso_gene_4191|Tiso_gene_7855|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_9394}}
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{{#set: in pathway=PWY-6000}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:05, 21 March 2018

Gene Tiso_gene_18748

  • right end position:
    • 1984
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2
  • centisome position:
    • 7.09471460e-2
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18748&oldid=45853"