Difference between revisions of "GDP-TP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] == * direction: ** REVERSI...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP-TP GDP-TP] == * smiles: ** C(OP([O-])(=O)OP([O-])(=O)OP([O-])(=O)[O-])C1(OC(C(O)C(OP([O-])(...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP-TP GDP-TP] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** C(OP([O-])(=O)OP([O-])(=O)OP([O-])(=O)[O-])C1(OC(C(O)C(OP([O-])(=O)OP(O)([O-])=O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
 
* common name:
 
* common name:
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** branched-chain_amino_acid_aminotransferase
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** pppGpp
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
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** InChIKey=KCPMACXZAITQAX-UUOKFMHZSA-H
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* molecular weight:
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** 677.095   
 
* Synonym(s):
 
* Synonym(s):
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** guanosine pentaphosphate
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** guanosine 3'-diphosphate 5'-triphosphate
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** guanosine 5'-triphosphate,3'-diphosphate
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[RXN0-6427]]
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** 1 [[ILE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[2-KETO-3-METHYL-VALERATE]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[GTPPYPHOSKIN-RXN]]
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** 1 L-isoleucine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 (S)-3-methyl-2-oxopentanoate[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14984]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_18403]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_17748]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5108]], L-isoleucine biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5108 PWY-5108]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5078]], L-isoleucine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5078 PWY-5078]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-CPD:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24801 24801]
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** [http://www.genome.jp/dbget-bin/www_bget?C04494 C04494]
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* LIGAND-RXN:
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* HMDB : HMDB60480
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** [http://www.genome.jp/dbget-bin/www_bget?R02199 R02199]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16690 16690]
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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* BIGG : gdptp
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/P47176 P47176]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46173549 46173549]
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** [http://www.uniprot.org/uniprot/O86505 O86505]
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{{#set: smiles=C(OP([O-])(=O)OP([O-])(=O)OP([O-])(=O)[O-])C1(OC(C(O)C(OP([O-])(=O)OP(O)([O-])=O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))}}
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** [http://www.uniprot.org/uniprot/O14370 O14370]
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{{#set: common name=pppGpp}}
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** [http://www.uniprot.org/uniprot/O32954 O32954]
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{{#set: inchi key=InChIKey=KCPMACXZAITQAX-UUOKFMHZSA-H}}
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
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{{#set: molecular weight=677.095    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=guanosine pentaphosphate|guanosine 3'-diphosphate 5'-triphosphate|guanosine 5'-triphosphate,3'-diphosphate}}
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{{#set: common name=branched-chain_amino_acid_aminotransferase}}
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{{#set: consumed by=RXN0-6427}}
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{{#set: ec number=EC-2.6.1.42}}
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{{#set: produced by=GTPPYPHOSKIN-RXN}}
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{{#set: gene associated=Tiso_gene_14984|Tiso_gene_18403|Tiso_gene_17748}}
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{{#set: in pathway=ILEUSYN-PWY|ILEUDEG-PWY|PWY-5108|PWY-5103|PWY-5101|PWY-5078|PWY-5104}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:06, 21 March 2018

Metabolite GDP-TP

  • smiles:
    • C(OP([O-])(=O)OP([O-])(=O)OP([O-])(=O)[O-])C1(OC(C(O)C(OP([O-])(=O)OP(O)([O-])=O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))
  • common name:
    • pppGpp
  • inchi key:
    • InChIKey=KCPMACXZAITQAX-UUOKFMHZSA-H
  • molecular weight:
    • 677.095
  • Synonym(s):
    • guanosine pentaphosphate
    • guanosine 3'-diphosphate 5'-triphosphate
    • guanosine 5'-triphosphate,3'-diphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C(OP([O-])(=O)OP([O-])(=O)OP([O-])(=O)[O-])C1(OC(C(O)C(OP([O-])(=O)OP(O)([O-])=O)1)N3(C=NC2(C(=O)NC(N)=NC=23)))" cannot be used as a page name in this wiki.




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