Difference between revisions of "Tiso gene 10282"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] == * direction: ** LEFT-TO-RIGHT * common name: ** ump-cmp_kinase ** cytidylat...")
(Created page with "Category:Gene == Gene Tiso_gene_10282 == * right end position: ** 8609 * transcription direction: ** POSITIVE * left end position: ** 3609 * centisome position: ** 41.6359...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] ==
+
== Gene Tiso_gene_10282 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 8609
−
* common name:
+
* transcription direction:
−
** ump-cmp_kinase
+
** POSITIVE
−
** cytidylate_kinase
+
* left end position:
−
* ec number:
+
** 3609
−
** [http://enzyme.expasy.org/EC/2.7.4.22 EC-2.7.4.22]
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
+
** 41.635902   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[ATPASE-RXN]]
−
** 1 [[ATP]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[ADP]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 ATP[c] '''+''' 1 UMP[c] '''=>''' 1 UDP[c] '''+''' 1 ADP[c]
+
** Source: [[annotation-experimental_annotation]]
−
 
+
*** Assignment: ec-number
−
== Genes associated with this reaction  ==
+
* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_17057]]
+
*** Assignment: ec-number
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_14116]]
+
*** Assignment: ec-number
−
** [[pantograph]]-[[esiliculosus]]
+
* Reaction: [[RXN-12195]]
−
* [[Tiso_gene_2386]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
* Reaction: [[RXN-12196]]
−
* [[Tiso_gene_9739]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: ec-number
−
***EC-NUMBER
+
* Reaction: [[RXN0-5462]]
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_19734]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
== Pathways associated ==
 +
* [[PWY-7184]]
 +
* [[PWY-7198]]
 +
* [[PWY-6545]]
 +
* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=8609}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24400 24400]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=3609}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00158 R00158]
+
{{#set: centisome position=41.635902    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
−
{{#set: common name=ump-cmp_kinase}}
+
{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
−
{{#set: common name=cytidylate_kinase}}
+
−
{{#set: ec number=EC-2.7.4.22}}
+
−
{{#set: ec number=EC-2.7.4.14}}
+
−
{{#set: gene associated=Tiso_gene_17057|Tiso_gene_14116|Tiso_gene_2386|Tiso_gene_9739|Tiso_gene_19734}}
+
−
{{#set: in pathway=PWY-7176}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:06, 21 March 2018

Gene Tiso_gene_10282

  • right end position:
    • 8609
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3609
  • centisome position:
    • 41.635902
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10282&oldid=46021"