Difference between revisions of "SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_16258 == * left end position: ** 1743 * transcription direction: ** POSITIVE * right end position: ** 4351 * centisome position: ** 38.9062...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] == * direction:...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_16258 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN] ==
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* left end position:
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* direction:
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** 1743
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** glutarate-semialdehyde_dehydrogenase
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* right end position:
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* ec number:
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** 4351
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** [http://enzyme.expasy.org/EC/1.2.1.24 EC-1.2.1.24]
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* centisome position:
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** 38.90625   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[GLUTSEMIALDEHYDROG-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[SUCC-S-ALD]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[SUC]][c] '''+''' 2 [[PROTON]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 succinate semialdehyde[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 NADH[c] '''+''' 1 succinate[c] '''+''' 2 H+[c]
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* [[PWY-6922]]
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* [[PROSYN-PWY]]
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== Genes associated with this reaction  ==
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* [[PWY-3341]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[ARGININE-SYN4-PWY]]
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* Gene: [[Tiso_gene_777]]
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* [[CITRULBIO-PWY]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_91]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_6952]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-creinhardtii]]
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== Pathways ==
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* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6535]], 4-aminobutanoate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6535 PWY-6535]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6473]], 4-aminobutanoate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6473 PWY-6473]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1743}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13217 13217]
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{{#set: right end position=4351}}
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* LIGAND-RXN:
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{{#set: centisome position=38.90625    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00713 R00713]
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{{#set: reaction associated=GLUTSEMIALDEHYDROG-RXN}}
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* UNIPROT:
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{{#set: pathway associated=PWY-6922|PROSYN-PWY|PWY-3341|ARGININE-SYN4-PWY|CITRULBIO-PWY}}
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** [http://www.uniprot.org/uniprot/P51649 P51649]
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** [http://www.uniprot.org/uniprot/P51650 P51650]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glutarate-semialdehyde_dehydrogenase}}
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{{#set: ec number=EC-1.2.1.24}}
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{{#set: gene associated=Tiso_gene_777|Tiso_gene_91|Tiso_gene_6952}}
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{{#set: in pathway=PWY-4321|PWY-6535|GLUDEG-I-PWY|PWY-6473}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:07, 21 March 2018

Reaction SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • glutarate-semialdehyde_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 succinate semialdehyde[c] + 1 NAD+[c] + 1 H2O[c] => 1 NADH[c] + 1 succinate[c] + 2 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4321, L-glutamate degradation IV: PWY-4321
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6535, 4-aminobutanoate degradation I: PWY-6535
    • 2 reactions found over 2 reactions in the full pathway
  • GLUDEG-I-PWY, GABA shunt: GLUDEG-I-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6473, 4-aminobutanoate degradation IV: PWY-6473
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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