Difference between revisions of "RXN-12002"

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(Created page with "Category:Gene == Gene Tiso_gene_15048 == * left end position: ** 3612 * transcription direction: ** POSITIVE * right end position: ** 5020 * centisome position: ** 68.5259...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] == * direction: ** LEFT-TO-RIGHT * common name: ** ump-cmp_kinase ** cytidylat...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_15048 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] ==
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* left end position:
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* direction:
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** 3612
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ump-cmp_kinase
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* right end position:
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** cytidylate_kinase
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** 5020
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.4.22 EC-2.7.4.22]
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** 68.5259   
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** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3PGAREARR-RXN]]
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* With identifiers:
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** experimental_annotation
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** 1 [[ATP]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[ADP]][c]
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***ec-number
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* With common name(s):
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** [[pantograph]]-[[esiliculosus]]
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** 1 ATP[c] '''+''' 1 UMP[c] '''=>''' 1 UDP[c] '''+''' 1 ADP[c]
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** [[pantograph]]-[[creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* Gene: [[Tiso_gene_17057]]
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* [[PWY-1042]]
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** Source: [[orthology-esiliculosus]]
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* [[P341-PWY]]
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* Gene: [[Tiso_gene_14116]]
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* [[PWY-2221]]
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** Source: [[orthology-esiliculosus]]
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* [[GLUCONEO-PWY]]
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* Gene: [[Tiso_gene_2386]]
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* [[GLYCOLYSIS]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6901]]
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*** Assignment: EC-NUMBER
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* [[PWY-7218]]
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** Source: [[annotation-experimental_annotation]]
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* [[P124-PWY]]
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*** Assignment: EC-NUMBER
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* [[PWY-6886]]
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* Gene: [[Tiso_gene_9739]]
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* [[PWY-5723]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6142]]
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*** Assignment: EC-NUMBER
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* [[PWY-5484]]
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** Source: [[annotation-experimental_annotation]]
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* [[PWY-7124]]
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*** Assignment: EC-NUMBER
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* [[PWY-7003]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_19734]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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== Pathways ==
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* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3612}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24400 24400]
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{{#set: right end position=5020}}
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* LIGAND-RXN:
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{{#set: centisome position=68.5259    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00158 R00158]
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{{#set: reaction associated=3PGAREARR-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-1042|P341-PWY|PWY-2221|GLUCONEO-PWY|GLYCOLYSIS|PWY-6901|PWY-7218|P124-PWY|PWY-6886|PWY-5723|PWY-6142|PWY-5484|PWY-7124|PWY-7003}}
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{{#set: common name=ump-cmp_kinase}}
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{{#set: common name=cytidylate_kinase}}
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{{#set: ec number=EC-2.7.4.22}}
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{{#set: ec number=EC-2.7.4.14}}
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{{#set: gene associated=Tiso_gene_17057|Tiso_gene_14116|Tiso_gene_2386|Tiso_gene_9739|Tiso_gene_19734}}
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{{#set: in pathway=PWY-7176}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:07, 21 March 2018

Reaction RXN-12002

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ump-cmp_kinase
    • cytidylate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 UMP[c] => 1 UDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7176, UTP and CTP de novo biosynthesis: PWY-7176
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12002&oldid=46050"