Difference between revisions of "3-HYDROXYDECANOYL-ACP-DEHYDR-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18208 RXN-18208] == * direction: ** REVERSIBLE * common name: ** 3-isopropylmalate dehydrogenas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] == * direction: ** LEFT-TO-RIGHT...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18208 RXN-18208] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 3-isopropylmalate dehydrogenase
+
** polyketide_synthase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPDQT-36]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[CPD-19491]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[OH-ACYL-ACP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-(3'-methylthio)propylmalate[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 3-isopropyl-6-(methylthio)-2-oxohexanoate[c] '''+''' 1 H+[c]
+
** 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-2-enoyl-[acyl-carrier protein][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2920]]
+
* Gene: [[Tiso_gene_13394]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_135]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6884]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYQT-4450]], aliphatic glucosinolate biosynthesis, side chain elongation cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4450 PWYQT-4450]
+
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated: [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
−
** '''10''' reactions found over '''30''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* LIGAND-RXN:
−
{{#set: common name=3-isopropylmalate dehydrogenase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R10208 R10208]
−
{{#set: gene associated=Tiso_gene_2920}}
+
* UNIPROT:
−
{{#set: in pathway=PWYQT-4450}}
+
** [http://www.uniprot.org/uniprot/P0A6Q3 P0A6Q3]
 +
** [http://www.uniprot.org/uniprot/P45159 P45159]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=polyketide_synthase}}
 +
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-4.2.1.59}}
 +
{{#set: gene associated=Tiso_gene_13394|Tiso_gene_135|Tiso_gene_6884|Tiso_gene_500|Tiso_gene_136|Tiso_gene_10876}}
 +
{{#set: in pathway=FASYN-ELONG-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:08, 21 March 2018

Reaction 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] => 1 H2O[c] + 1 a trans-2-enoyl-[acyl-carrier protein][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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