Difference between revisions of "Tiso gene 3215"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] == * direction: ** LEFT-TO-RIGHT * common name: ** proline,2-oxoglutarate-...")
(Created page with "Category:Gene == Gene Tiso_gene_3215 == * right end position: ** 5707 * transcription direction: ** NEGATIVE * left end position: ** 1798 * centisome position: ** 10.43710...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3641 RXN490-3641] ==
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== Gene Tiso_gene_3215 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5707
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* common name:
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* transcription direction:
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** proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
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** 1798
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* centisome position:
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** 10.437105   
 
* Synonym(s):
 
* Synonym(s):
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** prolyl hydroxylase
 
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** prolyl 4-hydroxylase
 
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** proline,2-oxoglutarate 4-dioxygenase
 
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** proline hydroxylase
 
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** protocollagen hydroxylase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-12086]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PRO]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[4-HYDROXY-L-PROLINE]][c] '''+''' 1 [[SUC]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 L-proline[c] '''=>''' 1 CO2[c] '''+''' 1 trans-4-hydroxy-L-proline[c] '''+''' 1 succinate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12579]]
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* [[Tiso_gene_6296]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_16842]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_17593]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[TRIACYLGLYCEROL-LIPASE-RXN]]
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* [[Tiso_gene_17823]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_18933]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_9636]]
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** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_8652]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_3021]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18689]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18235]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9227]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_15328]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18145]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9035]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_13008]]
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[creinhardtii]]
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−
* [[Tiso_gene_9165]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_15594]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_2158]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9873]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_18208]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_9455]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_292]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_2280]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_19638]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_16122]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_17919]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[Tiso_gene_1468]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
== Pathways  ==
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−
== Reconstruction information  ==
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* Category: [[orthology]]
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−
** Source: [[orthology-athaliana]]
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−
*** Tool: [[pantograph]]
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−
** Source: [[orthology-creinhardtii]]
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−
*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* Category: [[manual]]
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* [[LIPAS-PWY]]
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** Source: [[manual-primary_network]]
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* [[PWY-6857]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=5707}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01252 R01252]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=1798}}
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{{#set: common name=proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)}}
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{{#set: centisome position=10.437105    }}
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{{#set: ec number=EC-1.14.11}}
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{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
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{{#set: common name=prolyl hydroxylase|prolyl 4-hydroxylase|proline,2-oxoglutarate 4-dioxygenase|proline hydroxylase|protocollagen hydroxylase}}
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{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
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{{#set: gene associated=Tiso_gene_6296|Tiso_gene_16842|Tiso_gene_17593|Tiso_gene_17823|Tiso_gene_18933|Tiso_gene_9636|Tiso_gene_8652|Tiso_gene_3021|Tiso_gene_18689|Tiso_gene_18235|Tiso_gene_9227|Tiso_gene_15328|Tiso_gene_18145|Tiso_gene_9035|Tiso_gene_13008|Tiso_gene_9165|Tiso_gene_15594|Tiso_gene_2158|Tiso_gene_9873|Tiso_gene_18208|Tiso_gene_9455|Tiso_gene_292|Tiso_gene_2280|Tiso_gene_19638|Tiso_gene_16122|Tiso_gene_17919|Tiso_gene_1468}}
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−
{{#set: in pathway=}}
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−
{{#set: reconstruction category=orthology|manual}}
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{{#set: reconstruction source=manual-primary_network|orthology-creinhardtii|orthology-athaliana|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph}}
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Latest revision as of 20:08, 21 March 2018

Gene Tiso_gene_3215

  • right end position:
    • 5707
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1798
  • centisome position:
    • 10.437105
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3215&oldid=46255"