Difference between revisions of "RXN0-5021"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_prot...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5021 RXN0-5021] == * direction: ** REVERSIBLE * common name: ** dna_primase * ec number: ** [h...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5021 RXN0-5021] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 5_deoxy_cytosolic_type_c_protein
+
** dna_primase
−
** 5_-nucleotidase
+
−
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/2.7.7 EC-2.7.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GUANOSINE]][c]
+
** 1 [[Single-Stranded-DNAs]][c] '''<=>''' 1 [[Short-RNA-Fragments]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 GMP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 guanosine[c]
+
** 1 a single stranded DNA[c] '''<=>''' 1 a short RNA Segment[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14435]]
+
* Gene: [[Tiso_gene_4483]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_5911]]
+
* Gene: [[Tiso_gene_18238]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_13929]]
+
* Gene: [[Tiso_gene_7005]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_7205]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_6640]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_14246]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_14434]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6988]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_9166]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27714 27714]
+
{{#set: common name=dna_primase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-2.7.7}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01227 R01227]
+
{{#set: gene associated=Tiso_gene_4483|Tiso_gene_18238|Tiso_gene_7005|Tiso_gene_7205}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: in pathway=}}
−
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
+
−
{{#set: common name=5_-nucleotidase}}
+
−
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-3.1.3.5}}
+
−
{{#set: gene associated=Tiso_gene_14435|Tiso_gene_5911|Tiso_gene_13929|Tiso_gene_6640|Tiso_gene_14246|Tiso_gene_14434|Tiso_gene_6988|Tiso_gene_9166}}
+
−
{{#set: in pathway=PWY-6608|PWY-6607|PWY-6606}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:08, 21 March 2018

Reaction RXN0-5021

  • direction:
    • REVERSIBLE
  • common name:
    • dna_primase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5021&oldid=46271"