Difference between revisions of "RXN-9533"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.1.9-RXN 1.3.1.9-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9533 RXN-9533] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.1.9-RXN 1.3.1.9-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9533 RXN-9533] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.9 EC-1.3.1.9]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[ACYL-ACP]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[R-3-hydroxydodecanoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Dodec-2-enoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 an acyl-[acyl-carrier protein][c] '''<=>''' 1 NADH[c] '''+''' 1 a trans-2-enoyl-[acyl-carrier protein][c] '''+''' 1 H+[c]
+
** 1 a (3R)-3-hydroxydodecanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a (2E)-dodec-2-enoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10778]]
+
* Gene: [[Tiso_gene_135]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_500]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10876]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13394]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6884]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7664]], oleate biosynthesis IV (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[manual]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[manual-primary_network]]
−
*** Tool: [[pantograph]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01403 R01403]
+
{{#set: common name=polyketide_synthase}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: ec number=EC-1.3.1.9}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: gene associated=Tiso_gene_10778}}
+
{{#set: ec number=EC-4.2.1.59}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_135|Tiso_gene_136|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_6884}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-5994|PWY-5971|PWY-7664}}
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
{{#set: reconstruction category=manual|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:09, 21 March 2018

Reaction RXN-9533

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-7664, oleate biosynthesis IV (anaerobic): PWY-7664
    • 10 reactions found over 14 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9533&oldid=46379"