Difference between revisions of "Tiso gene 13477"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/5.1.3...")
 
(Created page with "Category:Gene == Gene Tiso_gene_13477 == * right end position: ** 4803 * transcription direction: ** NEGATIVE * left end position: ** 2772 * centisome position: ** 44.2387...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1882 RXN-1882] ==
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== Gene Tiso_gene_13477 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 4803
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/5.1.3.18 EC-5.1.3.18]
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** NEGATIVE
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* left end position:
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** 2772
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* centisome position:
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** 44.23875   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADENYL-KIN-RXN]]
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** 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
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** Source: [[orthology-esiliculosus]]
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* With common name(s):
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* Reaction: [[GLUC1PURIDYLTRANS-RXN]]
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** 1 GDP-&alpha;-D-mannose[c] '''<=>''' 1 GDP-&beta;-L-galactose[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[PGCM]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[PGMTh]]
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* [[Tiso_gene_6621]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[athaliana]]
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* Reaction: [[PHOSMANMUT-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-synechocystis]]
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== Pathways  ==
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* Reaction: [[PHOSPHOGLUCMUT-RXN]]
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* [[PWY4FS-12]], VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-12 PWY4FS-12]
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** Source: [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY4FS-13]], extended VTC2 cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-13 PWY4FS-13]
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** Source: [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** Assignment: ec-number
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* [[PWY-5115]], GDP-L-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5115 PWY-5115]
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* Reaction: [[RXN-14456]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** Source: [[orthology-creinhardtii]]
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* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
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** Source: [[orthology-creinhardtii]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* Reaction: [[RXN-16997]]
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== Reconstruction information  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[orthology]]:
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*** Assignment: ec-number
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** [[pantograph]]:
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** Source: [[annotation-experimental_annotation]]
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*** [[athaliana]]
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*** Assignment: ec-number
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*** [[esiliculosus]]
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* Reaction: [[RXN-16998]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-3801]]
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* [[PWY-7817]]
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* [[PWY-5659]]
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* [[PWY-2723]]
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* [[GLYCOGENSYNTH-PWY]]
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* [[PWY-5384]]
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* [[PWY-7343]]
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* [[PWY-7456]]
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* [[PWY-6527]]
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* [[PWY-5661]]
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* [[PWY-622]]
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* [[PWY-6317]]
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* [[PWY66-422]]
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* [[PWY-5941]]
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* [[PWY-5940]]
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* [[PWY-7238]]
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* [[PWY-882]]
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* [[GLYCOCAT-PWY]]
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* [[PWY-7219]]
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* [[PWY-7586]]
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* [[PWY-6731]]
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* [[GLUCOSE1PMETAB-PWY]]
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* [[PWY-6737]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4803}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11144 11144]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2772}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00889 R00889]
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{{#set: centisome position=44.23875    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=ADENYL-KIN-RXN|GLUC1PURIDYLTRANS-RXN|PGCM|PGMTh|PHOSMANMUT-RXN|PHOSPHOGLUCMUT-RXN|RXN-14456|RXN-16997|RXN-16998}}
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{{#set: ec number=EC-5.1.3.18}}
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{{#set: pathway associated=PWY-3801|PWY-7817|PWY-5659|PWY-2723|GLYCOGENSYNTH-PWY|PWY-5384|PWY-7343|PWY-7456|PWY-6527|PWY-5661|PWY-622|PWY-6317|PWY66-422|PWY-5941|PWY-5940|PWY-7238|PWY-882|GLYCOCAT-PWY|PWY-7219|PWY-7586|PWY-6731|GLUCOSE1PMETAB-PWY|PWY-6737}}
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{{#set: gene associated=Tiso_gene_6621}}
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{{#set: in pathway=PWY4FS-12|PWY4FS-13|PWY-5115|PWY-882}}
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−
{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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Latest revision as of 19:30, 21 March 2018

Gene Tiso_gene_13477

  • right end position:
    • 4803
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2772
  • centisome position:
    • 44.23875
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13477&oldid=41997"