Difference between revisions of "RIBOFLAVINSYNDEAM-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_4975 == * left end position: ** 8336 * transcription direction: ** POSITIVE * right end position: ** 12260 * centisome position: ** 59.1835...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
== Gene Tiso_gene_4975 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] ==
* left end position:
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* direction:
** 8336
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** LEFT-TO-RIGHT
* transcription direction:
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* common name:
** POSITIVE
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** riboflavin_biosynthesis_protein
* right end position:
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* ec number:
** 12260
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** [http://enzyme.expasy.org/EC/3.5.4.26 EC-3.5.4.26]
* centisome position:
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** 59.183525   
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* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
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== Reaction Formula ==
* [[CARBPSYN-RXN]]
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* With identifiers:
** in-silico_annotation
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** 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
***ec-number
+
* With common name(s):
** experimental_annotation
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** 1 H2O[c] '''+''' 1 H+[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''=>''' 1 ammonium[c] '''+''' 1 5-amino-6-(5-phospho-D-ribosylamino)uracil[c]
***automated-name-match
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* [[GLUTAMIN-RXN]]
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== Genes associated with this reaction  ==
** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
***ec-number
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* Gene: [[Tiso_gene_1389]]
** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
***automated-name-match
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*** Assignment: EC-NUMBER
* [[RXN-13202]]
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** Source: [[orthology-athaliana]]
** in-silico_annotation
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** Source: [[orthology-synechocystis]]
***ec-number
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** Source: [[orthology-esiliculosus]]
** experimental_annotation
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== Pathways  ==
***ec-number
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
* [[RXN-14196]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
** in-silico_annotation
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== Reconstruction information  ==
***ec-number
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* Category: [[orthology]]
** experimental_annotation
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** Source: [[orthology-athaliana]]
***ec-number
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*** Tool: [[pantograph]]
* [[RXN-16909]]
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** Source: [[orthology-synechocystis]]
** in-silico_annotation
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*** Tool: [[pantograph]]
***ec-number
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** Source: [[orthology-esiliculosus]]
** experimental_annotation
+
*** Tool: [[pantograph]]
***ec-number
+
* Category: [[annotation]]
* [[RXN-16910]]
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** Source: [[annotation-in-silico_annotation]]
** in-silico_annotation
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*** Tool: [[pathwaytools]]
***ec-number
+
** experimental_annotation
+
***ec-number
+
== Pathways associated ==
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* [[PWY-4984]]
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* [[GLUTAMINDEG-PWY]]
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* [[ARGSYN-PWY]]
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* [[PWY-5154]]
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* [[PWY-7790]]
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* [[ARGSYNBSUB-PWY]]
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* [[PWY-7693]]
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* [[PWY-7400]]
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* [[PWY-7791]]
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* [[PWY-5686]]
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* [[CITRULBIO-PWY]]
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== External links  ==
 
== External links  ==
{{#set: left end position=8336}}
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* RHEA:
{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21868 21868]
{{#set: right end position=12260}}
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* LIGAND-RXN:
{{#set: centisome position=59.183525    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
{{#set: reaction associated=CARBPSYN-RXN|GLUTAMIN-RXN|RXN-13202|RXN-14196|RXN-16909|RXN-16910}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: pathway associated=PWY-4984|GLUTAMINDEG-PWY|ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7693|PWY-7400|PWY-7791|PWY-5686|CITRULBIO-PWY}}
+
{{#set: common name=riboflavin_biosynthesis_protein}}
 +
{{#set: ec number=EC-3.5.4.26}}
 +
{{#set: gene associated=Tiso_gene_1389}}
 +
{{#set: in pathway=RIBOSYN2-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:09, 21 March 2018

Reaction RIBOFLAVINSYNDEAM-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_biosynthesis_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links