Difference between revisions of "PWY-6958"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6958 PWY-6958] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-30...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6958 PWY-6958] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3208 TAX-3208]
 
* common name:
 
* common name:
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** cysteinyl-trna
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** icosapentaenoate biosynthesis I (lower eukaryotes)
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** cysteine--trna_ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.1.1.16 EC-6.1.1.16]
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* Synonym(s):
 
* Synonym(s):
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** eicosapentaenoate biosynthesis I (lower eukaryotes)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''8''' reactions in the full pathway
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** 1 [[CYS]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CYS-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-CYS-tRNAs]][c]
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* [[RXN-16020]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 L-cysteine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAcys[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-cysteinyl-[tRNAcys][c]
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*** [[Tiso_gene_9871]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_17657]]
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* [[RXN-8350]]
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** IN-SILICO_ANNOTATION
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** 0 associated gene:
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***EC-NUMBER
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** 1 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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== Reaction(s) not found ==
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16019 RXN-16019]
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* [[Tiso_gene_10881]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16021 RXN-16021]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16022 RXN-16022]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16041 RXN-16041]
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** EXPERIMENTAL_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16042 RXN-16042]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8347 RXN-8347]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-3041}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
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{{#set: taxonomic range=TAX-3208}}
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* UNIPROT:
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{{#set: common name=icosapentaenoate biosynthesis I (lower eukaryotes)}}
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** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
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{{#set: common name=eicosapentaenoate biosynthesis I (lower eukaryotes)}}
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** [http://www.uniprot.org/uniprot/Q06752 Q06752]
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P43816 P43816]
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{{#set: total reaction=8}}
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** [http://www.uniprot.org/uniprot/O29836 O29836]
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{{#set: completion rate=25.0}}
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** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
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** [http://www.uniprot.org/uniprot/O58370 O58370]
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** [http://www.uniprot.org/uniprot/O83129 O83129]
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** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
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** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
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** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
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** [http://www.uniprot.org/uniprot/P41259 P41259]
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** [http://www.uniprot.org/uniprot/O51545 O51545]
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** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
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** [http://www.uniprot.org/uniprot/O67163 O67163]
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** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
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** [http://www.uniprot.org/uniprot/P47495 P47495]
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** [http://www.uniprot.org/uniprot/P75423 P75423]
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** [http://www.uniprot.org/uniprot/P74330 P74330]
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** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
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** [http://www.uniprot.org/uniprot/P21888 P21888]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=cysteinyl-trna}}
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{{#set: common name=cysteine--trna_ligase}}
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{{#set: ec number=EC-6.1.1.16}}
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{{#set: gene associated=Tiso_gene_17657|Tiso_gene_10881}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:30, 21 March 2018

Pathway PWY-6958

  • taxonomic range:
  • common name:
    • icosapentaenoate biosynthesis I (lower eukaryotes)
  • Synonym(s):
    • eicosapentaenoate biosynthesis I (lower eukaryotes)

Reaction(s) found

2 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6958&oldid=42001"