Difference between revisions of "3.5.1.98-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9523 RXN-9523] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-octanoyl-[acyl-carrier...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.98-RXN 3.5.1.98-RXN] == * direction: ** REVERSIBLE * common name: ** sir2-family_protein_hdac...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9523 RXN-9523] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.98-RXN 3.5.1.98-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3-oxo-octanoyl-[acyl-carrier protein] synthase
+
** sir2-family_protein_hdac1
−
** 3-oxoacyl-synthase
+
** histone_deacetylase
 +
** ORF
 +
** histone_deacetylase_7a
 +
** histone_deacetylase_1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
** [http://enzyme.expasy.org/EC/3.5.1.98 EC-3.5.1.98]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Hexanoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[MALONYL-ACP]][c] '''=>''' 1 [[3-Oxo-octanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[Histone-Acetyl-Lysine]][c] '''<=>''' 1 [[ACET]][c] '''+''' 1 [[Histone-L-lysine]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a hexanoyl-[acyl-carrier-protein][c] '''+''' 1 H+[c] '''+''' 1 a malonyl-[acp][c] '''=>''' 1 a 3-oxo-octanoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c]
+
** 1 H2O[c] '''+''' 1 a [histone]-N6-acetyl-L-lysine[c] '''<=>''' 1 acetate[c] '''+''' 1 a [histone]-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19302]]
+
* Gene: [[Tiso_gene_727]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_5939]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_275]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_14485]]
+
* Gene: [[Tiso_gene_17377]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_15991]]
+
* Gene: [[Tiso_gene_19850]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_17880]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_16490]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_12946]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_12131]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_18096]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17340]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_18920]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10459]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_3315]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
Line 52: Line 70:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=3-oxo-octanoyl-[acyl-carrier protein] synthase}}
+
{{#set: common name=sir2-family_protein_hdac1}}
−
{{#set: common name=3-oxoacyl-synthase}}
+
{{#set: common name=histone_deacetylase}}
−
{{#set: ec number=EC-2.3.1.41}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_19302|Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_15991}}
+
{{#set: common name=histone_deacetylase_7a}}
−
{{#set: in pathway=PWY-5971}}
+
{{#set: common name=histone_deacetylase_1}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: ec number=EC-3.5.1.98}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
{{#set: gene associated=Tiso_gene_727|Tiso_gene_275|Tiso_gene_17377|Tiso_gene_19850|Tiso_gene_17880|Tiso_gene_16490|Tiso_gene_12946|Tiso_gene_12131|Tiso_gene_18096|Tiso_gene_17340|Tiso_gene_18920|Tiso_gene_10459|Tiso_gene_3315}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:10, 21 March 2018

Reaction 3.5.1.98-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • sir2-family_protein_hdac1
    • histone_deacetylase
    • ORF
    • histone_deacetylase_7a
    • histone_deacetylase_1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3.5.1.98-RXN&oldid=46468"