Difference between revisions of "Tiso gene 777"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPREDUCT-RXN CDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonucleoside-diph...")
(Created page with "Category:Gene == Gene Tiso_gene_777 == * right end position: ** 26194 * transcription direction: ** NEGATIVE * left end position: ** 24009 * centisome position: ** 83.5560...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPREDUCT-RXN CDPREDUCT-RXN] ==
+
== Gene Tiso_gene_777 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 26194
−
* common name:
+
* transcription direction:
−
** ribonucleoside-diphosphate_reductase
+
** NEGATIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
+
** 24009
 +
* centisome position:
 +
** 83.55607   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN]]
−
** 1 [[CDP]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[DCDP]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: automated-name-match
−
** 1 CDP[c] '''+''' 1 a reduced thioredoxin[c] '''=>''' 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c] '''+''' 1 dCDP[c]
+
* Reaction: [[GLYCLTD]]
−
 
+
** Source: [[orthology-creinhardtii]]
−
== Genes associated with this reaction  ==
+
* Reaction: [[GLYCOLATE-REDUCTASE-RXN]]
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_10617]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9916]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9915]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10138]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
+
−
** '''12''' reactions found over '''17''' reactions in the full pathway
+
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
+
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
 +
* Reaction: [[GLYOXYLATE-REDUCTASE-NADP+-RXN]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: ec-number
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: ec-number
 +
* Reaction: [[RXN-6903]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: automated-name-match
 +
* Reaction: [[RXN-9952]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Reaction: [[RXN0-5289]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Reaction: [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: automated-name-match
 +
== Pathways associated ==
 +
* [[PWY-4321]]
 +
* [[GLUDEG-I-PWY]]
 +
* [[PWY-7295]]
 +
* [[OXIDATIVEPENT-PWY]]
 +
* [[PWY-7294]]
 +
* [[PWY-5022]]
 +
* [[PWY-6473]]
 +
* [[PWY-6535]]
 +
* [[PWY-5677]]
 +
* [[GLYCOLATEMET-PWY]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=26194}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28038 28038]
+
{{#set: transcription direction=NEGATIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=24009}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R02024 R02024]
+
{{#set: centisome position=83.55607    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction associated=4-HYDROXYBUTYRATE-DEHYDROGENASE-RXN|GLYCLTD|GLYCOLATE-REDUCTASE-RXN|GLYOXYLATE-REDUCTASE-NADP+-RXN|RXN-6903|RXN-9952|RXN0-5289|SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN}}
−
{{#set: common name=ribonucleoside-diphosphate_reductase}}
+
{{#set: pathway associated=PWY-4321|GLUDEG-I-PWY|PWY-7295|OXIDATIVEPENT-PWY|PWY-7294|PWY-5022|PWY-6473|PWY-6535|PWY-5677|GLYCOLATEMET-PWY}}
−
{{#set: ec number=EC-1.17.4.1}}
+
−
{{#set: gene associated=Tiso_gene_10617|Tiso_gene_9916|Tiso_gene_9915|Tiso_gene_10138}}
+
−
{{#set: in pathway=PWY-7184|PWY-7198|PWY-6545|PWY0-166|PWY-7210}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:10, 21 March 2018

Gene Tiso_gene_777

  • right end position:
    • 26194
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 24009
  • centisome position:
    • 83.55607
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_777&oldid=46477"