Difference between revisions of "6.3.4.16-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] == * direction: ** REVERSIBLE *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.4.16-RXN 6.3.4.16-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == *...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.4.16-RXN 6.3.4.16-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** pentafunctional_protein
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/4.2.1.10 EC-4.2.1.10]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c]
+
** 1.0 [[AMMONIUM]][c] '''+''' 2.0 [[ATP]][c] '''+''' 1.0 [[WATER]][c] '''+''' 1.0 [[CARBON-DIOXIDE]][c] '''=>''' 2.0 [[ADP]][c] '''+''' 1.0 [[Pi]][c] '''+''' 3.0 [[PROTON]][c] '''+''' 1.0 [[CARBAMOYL-P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3-dehydroquinate[c] '''<=>''' 1 H2O[c] '''+''' 1 3-dehydroshikimate[c]
+
** 1.0 ammonium[c] '''+''' 2.0 ATP[c] '''+''' 1.0 H2O[c] '''+''' 1.0 CO2[c] '''=>''' 2.0 ADP[c] '''+''' 1.0 phosphate[c] '''+''' 3.0 H+[c] '''+''' 1.0 carbamoyl phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5752]]
+
* Gene: [[Tiso_gene_4976]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_4685]]
−
* [[Tiso_gene_14718]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8720]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5753]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5619]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6707]], gallate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6707 PWY-6707]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6416]], quinate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6416 PWY-6416]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[QUINATEDEG-PWY]], quinate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=QUINATEDEG-PWY QUINATEDEG-PWY]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
−
* Category: [[annotation]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21096 21096]
+
{{#set: gene associated=Tiso_gene_4976|Tiso_gene_4685}}
−
* LIGAND-RXN:
+
{{#set: in pathway=}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
+
{{#set: reconstruction category=orthology}}
−
* UNIPROT:
+
{{#set: reconstruction source=orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P05195 P05195]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P46380 P46380]
+
−
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
+
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
−
** [http://www.uniprot.org/uniprot/P43878 P43878]
+
−
** [http://www.uniprot.org/uniprot/P05194 P05194]
+
−
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
+
−
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
+
−
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
+
−
** [http://www.uniprot.org/uniprot/P05147 P05147]
+
−
** [http://www.uniprot.org/uniprot/P24670 P24670]
+
−
** [http://www.uniprot.org/uniprot/P35146 P35146]
+
−
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
+
−
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
+
−
** [http://www.uniprot.org/uniprot/P73367 P73367]
+
−
** [http://www.uniprot.org/uniprot/O65917 O65917]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=pentafunctional_protein}}
+
−
{{#set: ec number=EC-4.2.1.10}}
+
−
{{#set: gene associated=Tiso_gene_5752|Tiso_gene_14718|Tiso_gene_8720|Tiso_gene_5753|Tiso_gene_5619}}
+
−
{{#set: in pathway=PWY-6707|PWY-6416|QUINATEDEG-PWY|PWY-6163}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|manual-primary_network|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:10, 21 March 2018

Reaction 6.3.4.16-RXN

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 ammonium[c] + 2.0 ATP[c] + 1.0 H2O[c] + 1.0 CO2[c] => 2.0 ADP[c] + 1.0 phosphate[c] + 3.0 H+[c] + 1.0 carbamoyl phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=6.3.4.16-RXN&oldid=46538"