Difference between revisions of "RXN-5841"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGPTf AGPTf] == * direction: ** LEFT-TO-RIGHT * common name: ** ATP:GMP phosphotransferase * Synony...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5841 RXN-5841] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_-nucleotidase ** 5_deoxy_cy...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGPTf AGPTf] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5841 RXN-5841] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ATP:GMP phosphotransferase
+
** 5_-nucleotidase
 +
** 5_deoxy_cytosolic_type_c_protein
 +
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
 +
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[GMP]][f] '''+''' 1.0 [[ATP]][f] '''=>''' 1.0 [[ADP]][f] '''+''' 1.0 [[GDP]][f]
+
** 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NICOTINAMIDE_RIBOSE]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 GMP[f] '''+''' 1.0 ATP[f] '''=>''' 1.0 ADP[f] '''+''' 1.0 GDP[f]
+
** 1 β-nicotinamide D-ribonucleotide[c] '''+''' 1 H2O[c] '''=>''' 1 1-(β-D ribofuranosyl)nicotinamide[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16793]]
+
* Gene: [[Tiso_gene_5911]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_6988]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13929]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14434]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14246]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6640]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14435]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5381]], pyridine nucleotide cycling (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5381 PWY-5381]
 +
** '''3''' reactions found over '''11''' reactions in the full pathway
 +
* [[NAD-BIOSYNTHESIS-II]], NAD salvage pathway III: [http://metacyc.org/META/NEW-IMAGE?object=NAD-BIOSYNTHESIS-II NAD-BIOSYNTHESIS-II]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30815 30815]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02323 R02323]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ATP:GMP phosphotransferase}}
+
{{#set: common name=5_-nucleotidase}}
−
{{#set: gene associated=Tiso_gene_16793}}
+
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
−
{{#set: in pathway=}}
+
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=ORF}}
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
{{#set: ec number=EC-3.1.3.5}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Tiso_gene_5911|Tiso_gene_6988|Tiso_gene_13929|Tiso_gene_14434|Tiso_gene_14246|Tiso_gene_6640|Tiso_gene_14435}}
 +
{{#set: in pathway=PWY-5381|NAD-BIOSYNTHESIS-II}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:11, 21 March 2018

Reaction RXN-5841

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5_-nucleotidase
    • 5_deoxy_cytosolic_type_c_protein
    • probable_cytosolic_imp-gmp_specific_5_-nucleotidase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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