Difference between revisions of "Tiso gene 14062"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDOTRANS-RXN KDOTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-deoxy-d-manno-octul...")
(Created page with "Category:Gene == Gene Tiso_gene_14062 == * right end position: ** 5744 * transcription direction: ** NEGATIVE * left end position: ** 1133 * centisome position: ** 19.3015...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDOTRANS-RXN KDOTRANS-RXN] ==
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== Gene Tiso_gene_14062 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5744
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* common name:
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* transcription direction:
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** 3-deoxy-d-manno-octulosonic-acid_transferase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.4.99.12 EC-2.4.99.12]
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** 1133
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* centisome position:
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** 19.301533   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-12086]]
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** 1 [[LIPID-IV-A]][c] '''+''' 1 [[CMP-KDO]][c] '''=>''' 1 [[KDO-LIPID-IVA]][c] '''+''' 1 [[CMP]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 lipid IVA[c] '''+''' 1 CMP-3-deoxy-β-D-manno-octulosonate[c] '''=>''' 1 α-Kdo-(2→6)-lipid IVA[c] '''+''' 1 CMP[c] '''+''' 1 H+[c]
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* Reaction: [[RXN-12579]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[TRIACYLGLYCEROL-LIPASE-RXN]]
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* [[Tiso_gene_14462]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_14463]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[KDOSYN-PWY]], Kdo transfer to lipid IVA I: [http://metacyc.org/META/NEW-IMAGE?object=KDOSYN-PWY KDOSYN-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7675]], Kdo transfer to lipid IVA II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7675 PWY-7675]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[LIPAS-PWY]]
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* [[PWY-6857]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5744}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28066 28066]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1133}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04658 R04658]
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{{#set: centisome position=19.301533    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
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{{#set: common name=3-deoxy-d-manno-octulosonic-acid_transferase}}
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{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
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{{#set: ec number=EC-2.4.99.12}}
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{{#set: gene associated=Tiso_gene_14462|Tiso_gene_14463}}
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{{#set: in pathway=KDOSYN-PWY|PWY-7675}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:11, 21 March 2018

Gene Tiso_gene_14062

  • right end position:
    • 5744
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1133
  • centisome position:
    • 19.301533
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14062&oldid=46618"