Difference between revisions of "RXN-12197"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12231 CPD-12231] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12197 RXN-12197] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12231 CPD-12231] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12197 RXN-12197] ==
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* smiles:
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* direction:
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** CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC4(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(OC3(OC(CO)C(OC2(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(OC1(OC(CO)C(O)C(O)C(NC(=O)C)1))C(CO)O2))C(O)C(NC(=O)C)3))C(CO)O4))([O-])=O)C)C)C)C)C)C)C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=YCEYFMFATQTSRQ-CLOLGSKGSA-H
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* common name:
 
* common name:
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** a peptidoglycan dimer (meso-diaminopimelate containing)
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** ORF
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* molecular weight:
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* ec number:
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** 2907.201   
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** [http://enzyme.expasy.org/EC/3.6.1.6 EC-3.6.1.6]
 
* Synonym(s):
 
* Synonym(s):
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** [N-acetylglucosamine-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine]2 diphospho-undecaprenyl
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-11302]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[WATER]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[UMP]][c] '''+''' 1 [[Pi]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 H2O[c] '''+''' 1 UDP[c] '''=>''' 1 H+[c] '''+''' 1 UMP[c] '''+''' 1 phosphate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_20236]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_12899]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90657721 90657721]
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** [http://www.genome.jp/dbget-bin/www_bget?R00155 R00155]
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(C)=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)OC4(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(OC3(OC(CO)C(OC2(C(NC(=O)C)C(OC(C)C(=O)NC(C)C(=O)NC(C(=O)[O-])CCC(=O)NC(CCCC([N+])C(=O)[O-])C(NC(C)C(=O)NC(C)C([O-])=O)=O)C(OC1(OC(CO)C(O)C(O)C(NC(=O)C)1))C(CO)O2))C(O)C(NC(=O)C)3))C(CO)O4))([O-])=O)C)C)C)C)C)C)C}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: inchi key=InChIKey=YCEYFMFATQTSRQ-CLOLGSKGSA-H}}
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{{#set: common name=ORF}}
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{{#set: common name=a peptidoglycan dimer (meso-diaminopimelate containing)}}
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{{#set: ec number=EC-3.6.1.6}}
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{{#set: molecular weight=2907.201    }}
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{{#set: gene associated=Tiso_gene_20236|Tiso_gene_12899}}
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{{#set: common name=[N-acetylglucosamine-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine]2 diphospho-undecaprenyl}}
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{{#set: in pathway=}}
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{{#set: consumed by=RXN-11302}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:11, 21 March 2018

Reaction RXN-12197

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 UDP[c] => 1 H+[c] + 1 UMP[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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