Difference between revisions of "SPERMIDINESYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 3-is...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3-isopropylmalate dehydratase
+
** spermidine_synthase
−
** ORF
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16]
 
* Synonym(s):
 
* Synonym(s):
−
** (2R,3S)-3-isopropylmalate hydro-lyase
 
−
** β-isopropylmalate dehydratase
 
−
** α-isopropylmalate isomerase
 
−
** 3-isopropylmalate hydro-lyase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
+
** 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[PUTRESCINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-isopropylmaleate[c] '''+''' 1 H2O[c] '''<=>''' 1 (2S)-2-isopropylmalate[c]
+
** 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 putrescine[c] '''<=>''' 1 H+[c] '''+''' 1 spermidine[c] '''+''' 1 S-methyl-5'-thioadenosine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12778]]
+
* Gene: [[Tiso_gene_17803]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[orthology-creinhardtii]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_16717]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_16718]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17081]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
+
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16293 16293]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
+
** [http://www.uniprot.org/uniprot/P19623 P19623]
−
** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
+
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
−
** [http://www.uniprot.org/uniprot/P80858 P80858]
+
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
−
** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
+
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
−
** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
+
** [http://www.uniprot.org/uniprot/P09158 P09158]
−
** [http://www.uniprot.org/uniprot/Q58673 Q58673]
+
** [http://www.uniprot.org/uniprot/O48660 O48660]
−
** [http://www.uniprot.org/uniprot/Q02144 Q02144]
+
−
** [http://www.uniprot.org/uniprot/P44968 P44968]
+
−
** [http://www.uniprot.org/uniprot/Q58667 Q58667]
+
−
** [http://www.uniprot.org/uniprot/P44438 P44438]
+
−
** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
+
−
** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
+
−
** [http://www.uniprot.org/uniprot/Q44022 Q44022]
+
−
** [http://www.uniprot.org/uniprot/Q44023 Q44023]
+
−
** [http://www.uniprot.org/uniprot/Q44427 Q44427]
+
−
** [http://www.uniprot.org/uniprot/P17279 P17279]
+
−
** [http://www.uniprot.org/uniprot/P04787 P04787]
+
−
** [http://www.uniprot.org/uniprot/P15717 P15717]
+
−
** [http://www.uniprot.org/uniprot/P18250 P18250]
+
−
** [http://www.uniprot.org/uniprot/Q02142 Q02142]
+
−
** [http://www.uniprot.org/uniprot/P30126 P30126]
+
−
** [http://www.uniprot.org/uniprot/P50181 P50181]
+
−
** [http://www.uniprot.org/uniprot/P07264 P07264]
+
−
** [http://www.uniprot.org/uniprot/P74207 P74207]
+
−
** [http://www.uniprot.org/uniprot/O86534 O86534]
+
−
** [http://www.uniprot.org/uniprot/O86535 O86535]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=3-isopropylmalate dehydratase}}
+
{{#set: common name=spermidine_synthase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.5.1.16}}
−
{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
+
{{#set: gene associated=Tiso_gene_17803|Tiso_gene_16717|Tiso_gene_16718|Tiso_gene_17081}}
−
{{#set: gene associated=Tiso_gene_12778}}
+
{{#set: in pathway=BSUBPOLYAMSYN-PWY}}
−
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:16, 21 March 2018

Reaction SPERMIDINESYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • spermidine_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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