Difference between revisions of "PPGPPSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carotenoid_isomeras...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPGPPSYN-RXN PPGPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ca2+-activated_spot-l...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.99.23-RXN 1.3.99.23-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPGPPSYN-RXN PPGPPSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** carotenoid_isomerase
+
** ca2+-activated_spot-like_protein
−
** carotene_isomerase
+
−
** fad_nad_-binding_oxidoreductase_domain-containing_protein
+
−
** carotenoid_isomerase-like_protein
+
−
** all-trans-_-dihydroretinol_saturase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.99.23 EC-1.3.99.23]
+
** [http://enzyme.expasy.org/EC/3.1.7.2 EC-3.1.7.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Donor-H2]][c] '''+''' 1 [[CPD-13524]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 1 [[CPD-7247]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[GUANOSINE-5DP-3DP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GDP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a reduced electron acceptor[c] '''+''' 1 all-trans-retinol[c] '''=>''' 1 an oxidized electron acceptor[c] '''+''' 1 all-trans-13,14-dihydroretinol[c]
+
** 1 H2O[c] '''+''' 1 ppGpp[c] '''=>''' 1 diphosphate[c] '''+''' 1 H+[c] '''+''' 1 GDP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16795]]
+
* Gene: [[Tiso_gene_6799]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_9534]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_917]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3092]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13369]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13367]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16794]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PPGPPMET-PWY]], ppGpp biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PPGPPMET-PWY PPGPPMET-PWY]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 50: Line 29:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19193 19193]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14253 14253]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07163 R07163]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00336 R00336]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PN26 Q9PN26]
 +
** [http://www.uniprot.org/uniprot/Q9JT97 Q9JT97]
 +
** [http://www.uniprot.org/uniprot/P43811 P43811]
 +
** [http://www.uniprot.org/uniprot/P0AG24 P0AG24]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=carotenoid_isomerase}}
+
{{#set: common name=ca2+-activated_spot-like_protein}}
−
{{#set: common name=carotene_isomerase}}
+
{{#set: ec number=EC-3.1.7.2}}
−
{{#set: common name=fad_nad_-binding_oxidoreductase_domain-containing_protein}}
+
{{#set: gene associated=Tiso_gene_6799}}
−
{{#set: common name=carotenoid_isomerase-like_protein}}
+
{{#set: in pathway=PPGPPMET-PWY}}
−
{{#set: common name=all-trans-_-dihydroretinol_saturase}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.3.99.23}}
+
−
{{#set: gene associated=Tiso_gene_16795|Tiso_gene_9534|Tiso_gene_917|Tiso_gene_3092|Tiso_gene_13369|Tiso_gene_13367|Tiso_gene_16794}}
+
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:17, 21 March 2018

Reaction PPGPPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ca2+-activated_spot-like_protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 ppGpp[c] => 1 diphosphate[c] + 1 H+[c] + 1 GDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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