Difference between revisions of "GCVT-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATUD ATUD] == * direction: ** LEFT-TO-RIGHT * common name: ** ATP:UDP phosphotransferase * Synonym(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] == * direction: ** REVERSIBLE * common name: ** dimethylglycine_dehydrogenase **...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATUD ATUD] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVT-RXN GCVT-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** ATP:UDP phosphotransferase
+
** dimethylglycine_dehydrogenase
 +
** aminomethyltransferase
 +
** glycine_cleavage_t-protein_c-terminal_barrel_domain
 +
** sarcosine_dehydrogenase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.1.2.10 EC-2.1.2.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[UDP]][c] '''+''' 1.0 [[ATP]][c] '''=>''' 1.0 [[ADP]][c] '''+''' 1.0 [[UTP]][c]
+
** 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 UDP[c] '''+''' 1.0 ATP[c] '''=>''' 1.0 ADP[c] '''+''' 1.0 UTP[c]
+
** 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 a tetrahydrofolate[c] '''<=>''' 1 ammonium[c] '''+''' 1 a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13128]]
+
* Gene: [[Tiso_gene_2717]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_16529]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_17287]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15700]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19389]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6882]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14788]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=ATP:UDP phosphotransferase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
−
{{#set: gene associated=Tiso_gene_13128|Tiso_gene_16529}}
+
* LIGAND-RXN:
−
{{#set: in pathway=}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
−
{{#set: reconstruction category=orthology}}
+
* UNIPROT:
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
** [http://www.uniprot.org/uniprot/P25285 P25285]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P28337 P28337]
 +
** [http://www.uniprot.org/uniprot/P27248 P27248]
 +
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
 +
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
 +
** [http://www.uniprot.org/uniprot/P48728 P48728]
 +
** [http://www.uniprot.org/uniprot/P49364 P49364]
 +
** [http://www.uniprot.org/uniprot/P49095 P49095]
 +
** [http://www.uniprot.org/uniprot/P49363 P49363]
 +
** [http://www.uniprot.org/uniprot/P54260 P54260]
 +
** [http://www.uniprot.org/uniprot/P49361 P49361]
 +
** [http://www.uniprot.org/uniprot/P49362 P49362]
 +
** [http://www.uniprot.org/uniprot/O49954 O49954]
 +
** [http://www.uniprot.org/uniprot/P93256 P93256]
 +
** [http://www.uniprot.org/uniprot/O32955 O32955]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=dimethylglycine_dehydrogenase}}
 +
{{#set: common name=aminomethyltransferase}}
 +
{{#set: common name=glycine_cleavage_t-protein_c-terminal_barrel_domain}}
 +
{{#set: common name=sarcosine_dehydrogenase}}
 +
{{#set: ec number=EC-2.1.2.10}}
 +
{{#set: gene associated=Tiso_gene_2717|Tiso_gene_17287|Tiso_gene_15700|Tiso_gene_19389|Tiso_gene_6882|Tiso_gene_14788}}
 +
{{#set: in pathway=GLYCLEAV-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:17, 21 March 2018

Reaction GCVT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • dimethylglycine_dehydrogenase
    • aminomethyltransferase
    • glycine_cleavage_t-protein_c-terminal_barrel_domain
    • sarcosine_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GCVT-RXN&oldid=47462"