Difference between revisions of "RXN-13603"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GMP-SYN-NH3-RXN GMP-SYN-NH3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutamine_amido...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13603 RXN-13603] == * direction: ** LEFT-TO-RIGHT * common name: ** neolinustatin β-digluc...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GMP-SYN-NH3-RXN GMP-SYN-NH3-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13603 RXN-13603] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glutamine_amidotransferase
+
** neolinustatin β-diglucosidase
 +
** beta-glucosidase-like_chloroplastic
 +
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
 +
** ORF
 +
** beta_glucosidase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''+''' 1 [[AMMONIUM]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[GMP]][c] '''+''' 1 [[AMP]][c] '''+''' 2 [[PROTON]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-14596]][c] '''=>''' 1 [[CPD-10277]][c] '''+''' 1 [[Glucopyranose]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 XMP[c] '''+''' 1 ammonium[c] '''=>''' 1 diphosphate[c] '''+''' 1 GMP[c] '''+''' 1 AMP[c] '''+''' 2 H+[c]
+
** 1 H2O[c] '''+''' 1 neolinustatin[c] '''=>''' 1 lotaustralin[c] '''+''' 1 D-glucopyranose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6657]]
+
* Gene: [[Tiso_gene_15067]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_6188]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_3467]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6007]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13306]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13305]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5836]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_8669]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2843]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10001]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6497]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2344]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_15066]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6187]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7092]], neolinustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7092 PWY-7092]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[annotation]]:
+
*** Tool: [[pathwaytools]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18301 18301]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01230 R01230]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glutamine_amidotransferase}}
+
{{#set: common name=neolinustatin β-diglucosidase}}
−
{{#set: gene associated=Tiso_gene_6657}}
+
{{#set: common name=beta-glucosidase-like_chloroplastic}}
−
{{#set: in pathway=}}
+
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=ORF}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=beta_glucosidase}}
−
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
+
{{#set: ec number=EC-3.2.1.21}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: gene associated=Tiso_gene_15067|Tiso_gene_6188|Tiso_gene_3467|Tiso_gene_6007|Tiso_gene_13306|Tiso_gene_13305|Tiso_gene_5836|Tiso_gene_8669|Tiso_gene_2843|Tiso_gene_10001|Tiso_gene_6497|Tiso_gene_2344|Tiso_gene_15066|Tiso_gene_6187}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: in pathway=PWY-7092}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:31, 21 March 2018

Reaction RXN-13603

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • neolinustatin β-diglucosidase
    • beta-glucosidase-like_chloroplastic
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • ORF
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 neolinustatin[c] => 1 lotaustralin[c] + 1 D-glucopyranose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7092, neolinustatin bioactivation: PWY-7092
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-13603&oldid=42110"