Difference between revisions of "Tiso gene 12171"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LIPIDADISACCHARIDESYNTH-RXN LIPIDADISACCHARIDESYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Gene == Gene Tiso_gene_12171 == * right end position: ** 6922 * transcription direction: ** POSITIVE * left end position: ** 1674 * centisome position: ** 23.1279...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LIPIDADISACCHARIDESYNTH-RXN LIPIDADISACCHARIDESYNTH-RXN] ==
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== Gene Tiso_gene_12171 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6922
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.4.1.182 EC-2.4.1.182]
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** 1674
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* centisome position:
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** 23.127935   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[TYROSINE--TRNA-LIGASE-RXN]]
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** 1 [[OH-MYRISTOYL]][c] '''+''' 1 [[BISOHMYR-GLUCOSAMINYL-1P]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[BISOHMYR-GLC]][c]
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* With common name(s):
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** 1 UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine[c] '''+''' 1 2,3-bis[(3R)-3-hydroxymyristoyl]-α-D-glucosaminyl 1-phosphate[c] '''=>''' 1 UDP[c] '''+''' 1 H+[c] '''+''' 1 lipid A disaccharide[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_6736]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[NAGLIPASYN-PWY]], lipid IVA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=NAGLIPASYN-PWY NAGLIPASYN-PWY]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[TRNA-CHARGING-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6922}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22668 22668]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=1674}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04606 R04606]
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{{#set: centisome position=23.127935    }}
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* UNIPROT:
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{{#set: reaction associated=TYROSINE--TRNA-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q9JX45 Q9JX45]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/Q9PIK8 Q9PIK8]
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** [http://www.uniprot.org/uniprot/P10441 P10441]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.4.1.182}}
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{{#set: gene associated=Tiso_gene_6736}}
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{{#set: in pathway=NAGLIPASYN-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:19, 21 March 2018

Gene Tiso_gene_12171

  • right end position:
    • 6922
  • transcription direction:
    • POSITIVE
  • left end position:
    • 1674
  • centisome position:
    • 23.127935
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12171&oldid=47750"